PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969784.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 426aa MW: 46690.1 Da PI: 7.1551

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.4e-40	130	205	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++ l ++k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk++ XP_024969784.1 130 CQVLGCNKSLISCKDYHKRHKVCEIHSKTAKVIVKGVEQRFCQQCSRFHLLSEFDDGKRSCRKRLADHNERRRKPH 205 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MESWSFGYVG KGLVSDESKS QIIFGNNMIV SPIDQMGIEN QGFGDMCFPQ IVGNSVFSTP 60 VMAATRYAFF EENESSSKLS GSVSDSDLNL NRIVNQEIPN MFTGSNNLCS SEVSMPSKQT 120 RVAGSPSPFC QVLGCNKSLI SCKDYHKRHK VCEIHSKTAK VIVKGVEQRF CQQCSRFHLL 180 SEFDDGKRSC RKRLADHNER RRKPHVGGHY GRHGRLLPSY PAGGKFKGIP RTRATSSSMY 240 HDDICPIKLE DEMANDISSM TQLHSESLSS GGNLGPQYPS LCSDSNRYTQ ASSSLFFPIF 300 SKNPTSEDEF GGFIAMDPTR MASDSRSALS LLSSQSQGGF STRNSTHSLH PLMIPFNHNG 360 DQAFGVSNNV NPLVGCEDVN PSNRIWSGDG STIDLLQLSS ELERVEHNKE IFGTNGASVG 420 LTTSNT

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MESWSFGYVG KGLVSDESKS QIIFGNNMIV SPIDQMGIEN QGFGDMCFPQ IVGNSVFSTP  60
VMAATRYAFF EENESSSKLS GSVSDSDLNL NRIVNQEIPN MFTGSNNLCS SEVSMPSKQT  120
RVAGSPSPFC QVLGCNKSLI SCKDYHKRHK VCEIHSKTAK VIVKGVEQRF CQQCSRFHLL  180
SEFDDGKRSC RKRLADHNER RRKPHVGGHY GRHGRLLPSY PAGGKFKGIP RTRATSSSMY  240
HDDICPIKLE DEMANDISSM TQLHSESLSS GGNLGPQYPS LCSDSNRYTQ ASSSLFFPIF  300
SKNPTSEDEF GGFIAMDPTR MASDSRSALS LLSSQSQGGF STRNSTHSLH PLMIPFNHNG  360
DQAFGVSNNV NPLVGCEDVN PSNRIWSGDG STIDLLQLSS ELERVEHNKE IFGTNGASVG  420
LTTSNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	227	RRRKPHVGGHYGRHGRLLPSYPAGGKFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	7e-45	SBP family protein