PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969722.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 544aa MW: 63880.4 Da PI: 9.2794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.1	6e-08	6	49	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++e r ++ +rtgC+a++k +++k + ++e + +e++HnH+l XP_024969722.1 6 HQREVRYSNIKRTGCTASVKFRLMKeTTTYECYGFEEDHNHSLL 49 36889999***************999***********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MVRRKHQREV RYSNIKRTGC TASVKFRLMK ETTTYECYGF EEDHNHSLLR HEDMDLTRKG 60 RQMKFSDQRF VHDXGISNMG ATRAHKLHTS LRGGYEYGGP TVVDYQNYKR NCDNFVGRGD 120 AKVLVDLMTK KRDADHNFFF EYNCVGSELH TIFXVDEVAR FNYSEFGDXI XFDATFRTNR 180 HSMVFVPFTA VDNHNCNVVV GSALVGHAHV PNYKWLLQAF QKAHSKPPMM ILTDQCPAMK 240 QAITSVFPDS RHRLCIWHIM NKVPNKFSYD LLNNTTFKKQ FFKLVWNIHI SPNEFESRWM 300 VLIEEFSLQD HPWLKDMFAL RSQWIPAYFK ELPMCCLMKT TSRRLYYAQV VRNLKESTVV 360 CSCNYIGRHG YLCRHVFKVL LNAGVEFIPE EYILRRWRHD LIPIELQNSR QRICDVGEDQ 420 RRIINDTYEI IDDVLDILRD DKEKLESFVA TLKEMRDDVA KDRTYEPSMK RKERGIEQII 480 GFTRPDNIEI HHATGIRNKG CGTSKRLIGA AEKAAVKSSR PKRMCRGCNM MFNHDIRNCP 540 NKTK

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MVRRKHQREV RYSNIKRTGC TASVKFRLMK ETTTYECYGF EEDHNHSLLR HEDMDLTRKG  60
RQMKFSDQRF VHDXGISNMG ATRAHKLHTS LRGGYEYGGP TVVDYQNYKR NCDNFVGRGD  120
AKVLVDLMTK KRDADHNFFF EYNCVGSELH TIFXVDEVAR FNYSEFGDXI XFDATFRTNR  180
HSMVFVPFTA VDNHNCNVVV GSALVGHAHV PNYKWLLQAF QKAHSKPPMM ILTDQCPAMK  240
QAITSVFPDS RHRLCIWHIM NKVPNKFSYD LLNNTTFKKQ FFKLVWNIHI SPNEFESRWM  300
VLIEEFSLQD HPWLKDMFAL RSQWIPAYFK ELPMCCLMKT TSRRLYYAQV VRNLKESTVV  360
CSCNYIGRHG YLCRHVFKVL LNAGVEFIPE EYILRRWRHD LIPIELQNSR QRICDVGEDQ  420
RRIINDTYEI IDDVLDILRD DKEKLESFVA TLKEMRDDVA KDRTYEPSMK RKERGIEQII  480
GFTRPDNIEI HHATGIRNKG CGTSKRLIGA AEKAAVKSSR PKRMCRGCNM MFNHDIRNCP  540
NKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-54	FAR1 family protein