PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969705.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 696aa MW: 80201.2 Da PI: 8.8422

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.2e-19	69	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++Y++Y +GF++r ++k ++ g + +r fvCs+eg++ +++ + e++rr+++ +rtgCka+lkv+ k +g++ev+++ + HnH XP_024969705.1 69 NMYRKYDDVAGFDIRLGSKKLNSLGG-VQTRYFVCSREGNPPKKEFDslevssGERKRRNTNLKRTGCKACLKVHYVKeSGRYEVYHFIEGHNHM 162 58*************999886655.99********9999889999999999***************999************** PP FAR1 89 la 90 l+ XP_024969705.1 163 LC 164 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MSDQREGISS NEIHDKYSDA VANEDGCYDA LSQEMGESPG GTKIWVPKVD XNICXKVGDF 60 FSSVESVENM YRKYDDVAGF DIRLGSKKLN SLGGVQTRYF VCSREGNPPK KEFDSLEVSS 120 GERKRRNTNL KRTGCKACLK VHYVKESGRY EVYHFIEGHN HMLCCSDEKM FTRSRRQLDY 180 KDRRNVYHAS SSKVGITXSX RMQLAMNGGL VASGXTARDH MNFRRDIMLF VGNKDAQMLI 240 NKMSKRREHC XEYFFEYKCD EKELIAIFWA DKTARMNYKH FGDTISFDAT FRTNKHAMIF 300 VPFVAIDNHK KSVVVGASLI RNESVVNFTW VLNAFMKAHG TQPQFVITDQ CATMKQAIPI 360 VFSKSTHRLC MWHITKKVKE KIHDHLAHGT PFKSKFNKLV WNVHISXESF EDKWNALMDE 420 YGLRGHSWFE EMYAIRESWI PAYFKDYPMS GLMRTTSRTT IPKLLSPSKI EAQAAKVYTK 480 TIFFDVQKEM NKTVWFCGVV EVVEVGDKMI YSITHKNKNS EVKATYKVVH DVRDESFDCS 540 CNHFVRNGIL CRHAFKVMLN SEVQSIPEKY ILPRWRRELV PNELMPARVR YGEMDVEKQA 600 LINQAISMFD LIIGRVRNDK GALTEFVEQL ERLGDEILVD VPILTSTEQK RNDIQELLCV 660 TEPESVDVLP PTGVRNKGCG TRKRLVGMSE RVSMNA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MSDQREGISS NEIHDKYSDA VANEDGCYDA LSQEMGESPG GTKIWVPKVD XNICXKVGDF  60
FSSVESVENM YRKYDDVAGF DIRLGSKKLN SLGGVQTRYF VCSREGNPPK KEFDSLEVSS  120
GERKRRNTNL KRTGCKACLK VHYVKESGRY EVYHFIEGHN HMLCCSDEKM FTRSRRQLDY  180
KDRRNVYHAS SSKVGITXSX RMQLAMNGGL VASGXTARDH MNFRRDIMLF VGNKDAQMLI  240
NKMSKRREHC XEYFFEYKCD EKELIAIFWA DKTARMNYKH FGDTISFDAT FRTNKHAMIF  300
VPFVAIDNHK KSVVVGASLI RNESVVNFTW VLNAFMKAHG TQPQFVITDQ CATMKQAIPI  360
VFSKSTHRLC MWHITKKVKE KIHDHLAHGT PFKSKFNKLV WNVHISXESF EDKWNALMDE  420
YGLRGHSWFE EMYAIRESWI PAYFKDYPMS GLMRTTSRTT IPKLLSPSKI EAQAAKVYTK  480
TIFFDVQKEM NKTVWFCGVV EVVEVGDKMI YSITHKNKNS EVKATYKVVH DVRDESFDCS  540
CNHFVRNGIL CRHAFKVMLN SEVQSIPEKY ILPRWRRELV PNELMPARVR YGEMDVEKQA  600
LINQAISMFD LIIGRVRNDK GALTEFVEQL ERLGDEILVD VPILTSTEQK RNDIQELLCV  660
TEPESVDVLP PTGVRNKGCG TRKRLVGMSE RVSMNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-73	FAR1 family protein