PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024969696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22938.3 Da PI: 6.2968 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.8 | 2.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqv+fskRrng++KK +EL vLCd++va+ ifs +g+lye+s+ XP_024969696.1 9 KRIEDKSSRQVSFSKRRNGLMKKTHELAVLCDVDVALFIFSGRGRLYEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 24.6 | 1.1e-09 | 107 | 169 | 37 | 99 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 hl ++++ L+ L+qLeqqL++ l+++R +K++ ++e ++ lq+ e +l++e + + ++++ XP_024969696.1 107 HLEENNIQLLDTTGLNQLEQQLDSLLQQVRIRKTQQMMEVVKALQEEEMQLKKERNFMMEEIM 169 5666789999*********************************************99998886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MGRGKVELKR IEDKSSRQVS FSKRRNGLMK KTHELAVLCD VDVALFIFSG RGRLYEFSTG 60 ESMIKLLTRY QSYKKTEELT RISVHKQKLD SENVCSADEL TQILKWHLEE NNIQLLDTTG 120 LNQLEQQLDS LLQQVRIRKT QQMMEVVKAL QEEEMQLKKE RNFMMEEIMA ARSDGIDDDS 180 GDPSQPQRPV MDAQIIW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.1 | 5e-35 | MIKC_MADS family protein |