PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969680.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 382aa MW: 43156.8 Da PI: 4.8059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.3e-10	308	348	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_024969680.1 308 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 348 9****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MESYGNVFDE EWVNLSSIFS CDQDSNHFAG HKLFSTEHDH GLNLEAPSIL WPSAKESNSS 60 NSSVNDDQIL AYTSDQDLKP NFCNYFSQES INATNSLPYP CHDDVFQFCH SNTPTDDVCD 120 QSKDLSLREG DSNNFSLLAQ VFSDEAMEEI LCLRQEVVKC KRENSVGLPV FIADLGKETP 180 LKRKYEMLQL PNELEDEGKS EKIDKNPKKK TRVSRENKNK KKLTSKKKQK MMMTAINSNE 240 DDGEESNQDN ENIINNNNGR GNAQSSSSCS SEDDSNVFQD TNGGAINLTV KTRAGRGAAT 300 DPQSIYARKR RERINERLRI LQNLVPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDKW 360 MYAPIAYNGM DMGLYQNISP NL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MESYGNVFDE EWVNLSSIFS CDQDSNHFAG HKLFSTEHDH GLNLEAPSIL WPSAKESNSS  60
NSSVNDDQIL AYTSDQDLKP NFCNYFSQES INATNSLPYP CHDDVFQFCH SNTPTDDVCD  120
QSKDLSLREG DSNNFSLLAQ VFSDEAMEEI LCLRQEVVKC KRENSVGLPV FIADLGKETP  180
LKRKYEMLQL PNELEDEGKS EKIDKNPKKK TRVSRENKNK KKLTSKKKQK MMMTAINSNE  240
DDGEESNQDN ENIINNNNGR GNAQSSSSCS SEDDSNVFQD TNGGAINLTV KTRAGRGAAT  300
DPQSIYARKR RERINERLRI LQNLVPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDKW  360
MYAPIAYNGM DMGLYQNISP NL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	3e-40	bHLH family protein