PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969326.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 1075aa MW: 118251 Da PI: 8.1156

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	166	243	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls ak+yhrrhkvCevhsk+ ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_024969326.1 166 MCQVDNCKEDLSAAKDYHRRHKVCEVHSKSGKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 243 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MEEVGTQLAP PLYMYNTIGA GRFSNGHPMA KKRSLPFQGT NFIQHQQQQQ YLQRLIPSLD 60 DSRNSWNPKN WEWDSSRLVA KPVDMMEISR EHEQQQQHHL PAIVSTNSDV SKKNPVGQRE 120 EDERLLLKLG GGLVPGEEPI TRPSKRVRSG SPGSGGGGGG GGNYPMCQVD NCKEDLSAAK 180 DYHRRHKVCE VHSKSGKALV GKQMQRFCQQ CSRFHPLSEF DEGKRSCRRR LAGHNRRRRK 240 TQPEDVASHL LLAGNGDKNG NGDMDIVNLL TVLARAQGNA EDMTRSSSPL PNKDQLIQIL 300 NKINSLPMPV DLVSKLPVSA SLKTIDQEKP SSEIQNKVNR KTSSSTMDLL GGLSGTSDAP 360 APNPPENSSQ KRNLAIESDK TNSSCRDQTM VLNPPNQPAA EMHSGGERSS TSFQSRGEDS 420 DCQVLDTPLN LQLQLFSSSP EDDSPPKLAS SRKYFSSDSS NPMEDRSPSS SPPVVQRLFP 480 TKSSRGRMKP ESMSTSGEVT ANVKASSVHG GTMSLELFGG PNAGTDNISI QSSPYRAGYT 540 SSSGSDQSPS SLNSDPQDRT GRILFKLFDK DPSHLPGSLR TQVYNWLSQS PSDMEGYIRP 600 GCVVLSIYLS MPLSSWDQLE GNFLQYINSL LQDSGTDFWG TGRFLAHTEK QIASHKDGKV 660 YLFKSLKAWS SPQLISVSPL AVVAGKETSL LLKGRNLRTP GTKIYCTHAD GCSLVEAKES 720 SQESTYEEIS TCSFTVCAPS VLGRCFIEIE NGFRGTSFPV IIADATLCKE LRLLEAEFGE 780 VLNGQSSSMK EVLHFLNELG WLFQRKGADS HYSLTRFKFL LVFSVERDFC ALVRTLLGIL 840 LKNGSGITDE ESYLEMLSGI NLLNRAVKRR CKNMVDLLIR YSVLDDKTAS RKYIFPPNAD 900 GPGGITPLHL AACTSNSDDM VDALTNDPQE IGMLCWNSSI DANGLSPFAY ASMRNNNSYN 960 TLVARKLADR IAGQVSVGIS NEIELQTSTR NEDHHELSFR VRDREIPKSC SRCATVAAKH 1020 PRRIPGSQGL LHRPYIHSML AIAAVCVCVC LFLRGAPDIG LVAPFKWENL NFGSM

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MEEVGTQLAP PLYMYNTIGA GRFSNGHPMA KKRSLPFQGT NFIQHQQQQQ YLQRLIPSLD  60
DSRNSWNPKN WEWDSSRLVA KPVDMMEISR EHEQQQQHHL PAIVSTNSDV SKKNPVGQRE  120
EDERLLLKLG GGLVPGEEPI TRPSKRVRSG SPGSGGGGGG GGNYPMCQVD NCKEDLSAAK  180
DYHRRHKVCE VHSKSGKALV GKQMQRFCQQ CSRFHPLSEF DEGKRSCRRR LAGHNRRRRK  240
TQPEDVASHL LLAGNGDKNG NGDMDIVNLL TVLARAQGNA EDMTRSSSPL PNKDQLIQIL  300
NKINSLPMPV DLVSKLPVSA SLKTIDQEKP SSEIQNKVNR KTSSSTMDLL GGLSGTSDAP  360
APNPPENSSQ KRNLAIESDK TNSSCRDQTM VLNPPNQPAA EMHSGGERSS TSFQSRGEDS  420
DCQVLDTPLN LQLQLFSSSP EDDSPPKLAS SRKYFSSDSS NPMEDRSPSS SPPVVQRLFP  480
TKSSRGRMKP ESMSTSGEVT ANVKASSVHG GTMSLELFGG PNAGTDNISI QSSPYRAGYT  540
SSSGSDQSPS SLNSDPQDRT GRILFKLFDK DPSHLPGSLR TQVYNWLSQS PSDMEGYIRP  600
GCVVLSIYLS MPLSSWDQLE GNFLQYINSL LQDSGTDFWG TGRFLAHTEK QIASHKDGKV  660
YLFKSLKAWS SPQLISVSPL AVVAGKETSL LLKGRNLRTP GTKIYCTHAD GCSLVEAKES  720
SQESTYEEIS TCSFTVCAPS VLGRCFIEIE NGFRGTSFPV IIADATLCKE LRLLEAEFGE  780
VLNGQSSSMK EVLHFLNELG WLFQRKGADS HYSLTRFKFL LVFSVERDFC ALVRTLLGIL  840
LKNGSGITDE ESYLEMLSGI NLLNRAVKRR CKNMVDLLIR YSVLDDKTAS RKYIFPPNAD  900
GPGGITPLHL AACTSNSDDM VDALTNDPQE IGMLCWNSSI DANGLSPFAY ASMRNNNSYN  960
TLVARKLADR IAGQVSVGIS NEIELQTSTR NEDHHELSFR VRDREIPKSC SRCATVAAKH  1020
PRRIPGSQGL LHRPYIHSML AIAAVCVCVC LFLRGAPDIG LVAPFKWENL NFGSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	865	870	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein