PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969325.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 445aa MW: 49677.5 Da PI: 4.5203

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	80.8	1.2e-25	132	195	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L ++RRiYDi+NVLe+++liekk kn+i+wkg XP_024969325.1 132 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL-------EKRRIYDITNVLEGIGLIEKKLKNRIQWKG 195 6899****************************.......89************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MQQQHNHKHP FLKRQLPFTS MKPPPFGDYH RFSTSSSTTA GHHESEAIVV KSPLLKRKGD 60 AATFEAESNE QNPNPGNALA ISSPLQTPMS GKLSKAQKIP RIGKCNRAGS QTSATNTDSP 120 SGNNLTPVGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AAETLEKRRI YDITNVLEGI 180 GLIEKKLKNR IQWKGLDAST GEVDENITSL QAEVENLSVE ELRLDEQTRD MQERLRDLSE 240 DENNQKWLFV TEEDIKSLPC FQEETLIAIK APHGTTLEVP DPDEAVDYPQ RRYRIVLRST 300 MGPIDVYLVS QFEEKLEEMN RAEPNSSIPS MMEMIENPTT ETAMEASQEH GVGMQTTDTQ 360 ACSDVNASED FVSGIMKIVP NIDSDADYWL LSDADVSITD MWRTESSVEW NDMGMLPNDY 420 DMPVVTTPHP QTPTSEMHSD ANPTG

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MQQQHNHKHP FLKRQLPFTS MKPPPFGDYH RFSTSSSTTA GHHESEAIVV KSPLLKRKGD  60
AATFEAESNE QNPNPGNALA ISSPLQTPMS GKLSKAQKIP RIGKCNRAGS QTSATNTDSP  120
SGNNLTPVGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AAETLEKRRI YDITNVLEGI  180
GLIEKKLKNR IQWKGLDAST GEVDENITSL QAEVENLSVE ELRLDEQTRD MQERLRDLSE  240
DENNQKWLFV TEEDIKSLPC FQEETLIAIK APHGTTLEVP DPDEAVDYPQ RRYRIVLRST  300
MGPIDVYLVS QFEEKLEEMN RAEPNSSIPS MMEMIENPTT ETAMEASQEH GVGMQTTDTQ  360
ACSDVNASED FVSGIMKIVP NIDSDADYWL LSDADVSITD MWRTESSVEW NDMGMLPNDY  420
DMPVVTTPHP QTPTSEMHSD ANPTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-146	E2F/DP family protein