PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969199.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 685aa MW: 79313.9 Da PI: 8.3193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	3e-21	104	198	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y++YA ++GF+vr++ +k++ ++gei +r+fvCs+eg++++++ + e++ ++++ +r+gC+a++k++++k ++ +e++++++ HnH+l XP_024969199.1 104 TYRAYADNAGFDVRMHVKKTN-KHGEIQTRWFVCSREGNPKKKDFDslymqpGERRYHNTNIKRCGCNACIKIHLTKdRACYEIYEFVEAHNHAL 197 59**********9887776.8888************999999988888889***************98999***********9 PP FAR1 90 a 90 + XP_024969199.1 198 F 198 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MDNPIVKEFQ NNENDKLDSR YEYGRNTIPD DEEDDQSVPI DSSNNEPNYF FPSYLDSITS 60 SQQEVDYDIG ESSERIKFFI PKVNDALNPN MKAQYATINE VERTYRAYAD NAGFDVRMHV 120 KKTNKHGEIQ TRWFVCSREG NPKKKDFDSL YMQPGERRYH NTNIKRCGCN ACIKIHLTKD 180 RACYEIYEFV EAHNHALFNN NDRRFSRKNR QMKYTDFKTV LNSSSYKVGA RRAHRIQTAL 240 NGGFEHTRIS EIDFKNFKRD VVACVANKDA TMLINKADEV ARINYKEFGD VISFDGTFRT 300 NKHAMIFVPF LAVDNHKASV VVGSALISGE TIDNFTWVLK AFLKCHAKQP VFVITDQCSA 360 MKQAIPKEFT ESKHRLCMWH IMKKVPSKIS VALNHDTTFN KVINKLVRNI HIGPSEFERR 420 HTDVWANENN IKIRYESYWF DLVQFLNNYD VAIEKQIYRQ SVHETVTRTT NPKFVTPLRL 480 ESHASSIYSR NVFFDIQKKI KKAVWFCVIE TVECRDDFKS FVISQKAKKS ADNITYLVGR 540 NYSTNTVECD CNLFTRNGYL CRHAFKIQSA RVRYGEVNAE KEKSIIDVYS KIDDIISIAH 600 NDQSILDRLG RNLEKFMVDI EKEVPYEDPS QQKLDAIRDH LGVSIPDKVD ILPPSGIRNK 660 GCGTGKRLLE LDLSVLLESV VDVIC

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MDNPIVKEFQ NNENDKLDSR YEYGRNTIPD DEEDDQSVPI DSSNNEPNYF FPSYLDSITS  60
SQQEVDYDIG ESSERIKFFI PKVNDALNPN MKAQYATINE VERTYRAYAD NAGFDVRMHV  120
KKTNKHGEIQ TRWFVCSREG NPKKKDFDSL YMQPGERRYH NTNIKRCGCN ACIKIHLTKD  180
RACYEIYEFV EAHNHALFNN NDRRFSRKNR QMKYTDFKTV LNSSSYKVGA RRAHRIQTAL  240
NGGFEHTRIS EIDFKNFKRD VVACVANKDA TMLINKADEV ARINYKEFGD VISFDGTFRT  300
NKHAMIFVPF LAVDNHKASV VVGSALISGE TIDNFTWVLK AFLKCHAKQP VFVITDQCSA  360
MKQAIPKEFT ESKHRLCMWH IMKKVPSKIS VALNHDTTFN KVINKLVRNI HIGPSEFERR  420
HTDVWANENN IKIRYESYWF DLVQFLNNYD VAIEKQIYRQ SVHETVTRTT NPKFVTPLRL  480
ESHASSIYSR NVFFDIQKKI KKAVWFCVIE TVECRDDFKS FVISQKAKKS ADNITYLVGR  540
NYSTNTVECD CNLFTRNGYL CRHAFKIQSA RVRYGEVNAE KEKSIIDVYS KIDDIISIAH  600
NDQSILDRLG RNLEKFMVDI EKEVPYEDPS QQKLDAIRDH LGVSIPDKVD ILPPSGIRNK  660
GCGTGKRLLE LDLSVLLESV VDVIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-40	FAR1 family protein