PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969041.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 550aa    MW: 61679.8 Da    PI: 7.2791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.2e-1732119196
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+       s+ l lp +fa +  ++    +k  +led+sg++W+vk+  +  +g   +++GW+ F  a+gLk+gDf+vF+++ +s f  vv
  XP_024969041.1  32 FFKVM--FGDEYSKVLFLPPRFAHSVrNM---VGKATRLEDPSGEKWKVKF--TMIDGFLAFEEGWNAFSTAHGLKVGDFLVFHYIMESHF--VV 117
                     55666..2233345699******777433...35689**************..********************************988888..66 PP

                     EE CS
              B3  95 kv 96 
                      +
  XP_024969041.1 118 LM 119
                     55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MVHVAEVCAE CTQNCLLMHK KDKNPSPVAT TFFKVMFGDE YSKVLFLPPR FAHSVRNMVG  60
KATRLEDPSG EKWKVKFTMI DGFLAFEEGW NAFSTAHGLK VGDFLVFHYI MESHFVVLMY  120
GQSGCPEIQH FGFNRHQMED TRKKQSLITD NTNSKPSNVN TTDHHISCES SQSEHSDNEH  180
PEIRPSVGTQ HKDERIKKKG TAVQLPPSVN AKNTCNRLLA SSSRPGPSVS GKELVGDENP  240
DNMVSETPPT VKQFCLVDND IEHVEDEHRS NLINRFHLDR LPTKKRAIEN LENLSERLSS  300
RDCLHDLSIP EINPLESDDV RKNNVAVGGC GNATQINKSG KTLETRSEES RENPKKSTIM  360
PSEATCNNSI KKRLRSSNLP IARPKKAKKE PAGASETDTL GSRLHDAVRP SPSTEIFPKS  420
IAKPMIATKK ELISDEKDND RFVKPEPVDY DEALPPGPTN SLFSAVMSSY QYLELPEWVK  480
LKKVILLRNG GDLWPVLYQN QLGLKALTQS WQVFARERGI QPGDNCEFVL ESEPNADLPC  540
SVFRVHVTAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-13B3 family protein