PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968960.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 552aa MW: 60838.1 Da PI: 4.7902

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_024968960.1 40 KGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	49.4	1.1e-15	93	136	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a +++ gRt++++k++w++ XP_024968960.1 93 KGAFTPEEERRIIELHAKMGNK-WARMAVELP-GRTDNEIKNFWNT 136 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MSNMTSESED RIMSRDCINS PTVDEASTER NMIGNGTLKK GPWTSAEDAI LVDYVNKHGE 60 GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGAFTPEE ERRIIELHAK MGNKWARMAV 120 ELPGRTDNEI KNFWNTRTKR RQRAGLPIYP PDICLQTLND NTQSQNMVTF TNGDTSHAEI 180 LPTNNFQIPA VEFKNLELSH ELYPPSFLDI PGGNFLDIPG GSLLPQGIGS SCNNSFLFPM 240 AHAPKRIRRS DTYPVCDGGD LNDFFPNVNL YQDDKLAQSF EISSSYNQNL NGDIPSSSSC 300 FFSGSHAFLN GNTSSSEPIS WATKLELPSL QYSTQMGSCG APSSPLPSLE SVDTLIQSTL 360 IGQTKSDSPS PRNSGLLEAV LYESQTMKMS KSNNNSNASV VPRDITDSSS QNLQGDDDWE 420 AYGDPMSPLG HSAASVFSEY TPHLSGSSLD EHQSVEIISV KHEAEEAIAK QSDREDEKAN 480 HLNYSRPDFL LGSNWFGSTS NADRNKDQSV VSDPIGALLG DDFCSDSKQT FLGHESGKWD 540 DISEICRAAE NR

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MSNMTSESED RIMSRDCINS PTVDEASTER NMIGNGTLKK GPWTSAEDAI LVDYVNKHGE  60
GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGAFTPEE ERRIIELHAK MGNKWARMAV  120
ELPGRTDNEI KNFWNTRTKR RQRAGLPIYP PDICLQTLND NTQSQNMVTF TNGDTSHAEI  180
LPTNNFQIPA VEFKNLELSH ELYPPSFLDI PGGNFLDIPG GSLLPQGIGS SCNNSFLFPM  240
AHAPKRIRRS DTYPVCDGGD LNDFFPNVNL YQDDKLAQSF EISSSYNQNL NGDIPSSSSC  300
FFSGSHAFLN GNTSSSEPIS WATKLELPSL QYSTQMGSCG APSSPLPSLE SVDTLIQSTL  360
IGQTKSDSPS PRNSGLLEAV LYESQTMKMS KSNNNSNASV VPRDITDSSS QNLQGDDDWE  420
AYGDPMSPLG HSAASVFSEY TPHLSGSSLD EHQSVEIISV KHEAEEAIAK QSDREDEKAN  480
HLNYSRPDFL LGSNWFGSTS NADRNKDQSV VSDPIGALLG DDFCSDSKQT FLGHESGKWD  540
DISEICRAAE NR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	5e-84	MYB family protein