PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968766.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 337aa MW: 37501.5 Da PI: 7.7055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.8e-12	158	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq XP_024968766.1 158 DHILAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKNLQ 204 5899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MEISQFRGFA ELSGIEDPCF TSQWPFNSFD DQLTSMATDA AAFGENTHYL YAHAPVFDHH 60 KPVMEPSPRP TKQLKTSSWN SCISSDQSIM NQNLHYVKPK EEGTVSSKTT IGFNCDTFPS 120 SHLQFNNQNH HGGGGGGSGG GAKMIATSTT PRVTTPQDHI LAERKRREKL SQRFIALSAL 180 VPGLKKMDKA SVLGDAIKYL KNLQEKVKTL EEQTKKRSNV ESVVFVKRYE VLADGGEISS 240 SDENFSGRPV HEQLPEVEAR FSGKDVLIRI HCEKKAGVVE ETLAEIEKLH LSIINSTTMT 300 FASYALDITV IAQMDQESTM KMKDLVKNLR AALKRFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	168	ERKRRE
2	164	169	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-58	bHLH family protein