PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968737.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 792aa MW: 91766.8 Da PI: 7.8589

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.4	4.2e-17	135	229	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y++YA+++GF+vr+s++k + +g i ++ fvCs+ g + +++ + +++e r+++ +r+gC+ ++k +++k + ++e + +e++HnH+l XP_024968737.1 135 IYQKYAESAGFEVRRSTQKIN-PDGVIQNKYFVCSRFGLPLKKSFDsmvrrkHQRELRNSNIKRIGCTTSVKFRLMKgTTTYECYGFEEDHNHSL 228 6*************98887.9999**********99998888887777778899*************9*************99 PP FAR1 90 a 90 XP_024968737.1 229 L 229 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence
MKNNGKNPID SSIHVNSDED RVYVNSHEEN VDVMKVVTWE ASEEFDVGLS PFTDVQRNCE 60 EIGLVDDIET HVIDDSTGYT SNNEIQNDES PAIDQAGQGL SISPGGTNWY TPVVEEVIKP 120 VIGYVYPSLD VAESIYQKYA ESAGFEVRRS TQKINPDGVI QNKYFVCSRF GLPLKKSFDS 180 MVRRKHQREL RNSNIKRIGC TTSVKFRLMK GTTTYECYGF EEDHNHSLLR HDDMDLTRKG 240 RQMKFSDQRF VHDAGISNMG ATRAHKLHTS LRGGYKYGGP TIVDYQNYKR DCDNFVGRGD 300 AKVLVDLMTK KRDADHNFFF EYNCVGSELH TIFWVDEVAR FNYSEFGDVI SFDATFRTNR 360 HSMVFVPFTA VDNHNCNVVV GSALVGHEHV PNYKWLLQAF RKAHSKPPMM ILTDQCPAMK 420 QAIASVFPDS RHKLCIWHIM NKVPNKFSYD LLNNTTFKKQ NFKLVWNIHI SPDEFESRWM 480 VLIQEFSLQD HPWLKDMFAL RSQWIPAYFK ELPMCCLMKT TSRSESANSF FNSFSKSGNN 540 LFQFMLGFEF ALEKQRREQR RLDYHTRTTL PKWLTYSQLE RHACEIYTHS VFFEVQTEIH 600 RAAWTCSIKS VNSNEEAETY LIEHLDKRDE KIAEYKVVRN LKESTVVCSC NHHRSSCRQR 660 ICDVGEDQRR IINDTYEIVD DVLDILRNDK EKLESFVVKL REMRDDVAKD RTYEPSMKRK 720 ERGIEQILGF TRPDNIEIHP ATGIRNKGCG TSKRLIGAAE KAAVNSSRPK RMCRGCNMLS 780 NHDIRNCPNK KK

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence

MKNNGKNPID SSIHVNSDED RVYVNSHEEN VDVMKVVTWE ASEEFDVGLS PFTDVQRNCE  60
EIGLVDDIET HVIDDSTGYT SNNEIQNDES PAIDQAGQGL SISPGGTNWY TPVVEEVIKP  120
VIGYVYPSLD VAESIYQKYA ESAGFEVRRS TQKINPDGVI QNKYFVCSRF GLPLKKSFDS  180
MVRRKHQREL RNSNIKRIGC TTSVKFRLMK GTTTYECYGF EEDHNHSLLR HDDMDLTRKG  240
RQMKFSDQRF VHDAGISNMG ATRAHKLHTS LRGGYKYGGP TIVDYQNYKR DCDNFVGRGD  300
AKVLVDLMTK KRDADHNFFF EYNCVGSELH TIFWVDEVAR FNYSEFGDVI SFDATFRTNR  360
HSMVFVPFTA VDNHNCNVVV GSALVGHEHV PNYKWLLQAF RKAHSKPPMM ILTDQCPAMK  420
QAIASVFPDS RHKLCIWHIM NKVPNKFSYD LLNNTTFKKQ NFKLVWNIHI SPDEFESRWM  480
VLIQEFSLQD HPWLKDMFAL RSQWIPAYFK ELPMCCLMKT TSRSESANSF FNSFSKSGNN  540
LFQFMLGFEF ALEKQRREQR RLDYHTRTTL PKWLTYSQLE RHACEIYTHS VFFEVQTEIH  600
RAAWTCSIKS VNSNEEAETY LIEHLDKRDE KIAEYKVVRN LKESTVVCSC NHHRSSCRQR  660
ICDVGEDQRR IINDTYEIVD DVLDILRNDK EKLESFVVKL REMRDDVAKD RTYEPSMKRK  720
ERGIEQILGF TRPDNIEIHP ATGIRNKGCG TSKRLIGAAE KAAVNSSRPK RMCRGCNMLS  780
NHDIRNCPNK KK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-70	FAR1 family protein