PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968652.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 567aa    MW: 63291.2 Da    PI: 6.3137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.19.1e-1291965661373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA a+s ++  + ++l++r +  +s +gdp+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf++
  XP_024968652.1 196 LKQLLIACASALSRNKIDEFEELVERARGYVSISGDPIQRLGAYMVEGLVARRELSGNNIYQALRCREPE---GKDLLSYMHILYEICPYLKFGY 287
                     689**************************************************99**************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN a+ ea  +eer+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + ++le +g+rL+ + +++++p+ef++l a     
  XP_024968652.1 288 MAANGAVAEACGKEERIHIIDFQIAQGTQWITLLQALAARPGGAPHVRITGIDDPVSKyaRGDSLELVGKRLEAVSQKFNIPVEFQPL-AVYAPY 381
                     *******************************************************999999**************************5.888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ e+L+v+ gEalaVn+ lqlh++ desv+++++rde L++vkslsPkvv++veqe+++n++ F+ rf+eal+yysa+f+s++ +l+r+ +eri
  XP_024968652.1 382 VTKEMLDVRDGEALAVNFPLQLHHMADESVDVNNPRDERLRMVKSLSPKVVTLVEQESNTNTAAFFPRFVEALDYYSAMFESMDGSLGRDRKERI 476
                     9********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF+++pls+++++ ++ ll+ ++ d y++ e+  g ++lgWk+r+L+s+SaW
  XP_024968652.1 477 NVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRNLLKCYS-DHYTLVEKdGGGMLLGWKHRNLISASAW 566
                     **********************************************************9998.55887766155666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    
MGSEQSFGYR VTGEGSSYSS SHPHIPLRLF ESLKFEARDS PNSPFLTHFD SEIFTTLSDS  60
QEKYSSTSGA SPSLEDSSSF NQSGSSAFVQ SLSGSVHYMK NALQDIETTL MAPDEEVSMP  120
KNPPSGQNRW QQASSQGPRQ WTPEPTSSNM VQPQAVYSPR YGPSGDGLHA EKRHKSMEEA  180
GLQAVQFPPG NNSNNLKQLL IACASALSRN KIDEFEELVE RARGYVSISG DPIQRLGAYM  240
VEGLVARREL SGNNIYQALR CREPEGKDLL SYMHILYEIC PYLKFGYMAA NGAVAEACGK  300
EERIHIIDFQ IAQGTQWITL LQALAARPGG APHVRITGID DPVSKYARGD SLELVGKRLE  360
AVSQKFNIPV EFQPLAVYAP YVTKEMLDVR DGEALAVNFP LQLHHMADES VDVNNPRDER  420
LRMVKSLSPK VVTLVEQESN TNTAAFFPRF VEALDYYSAM FESMDGSLGR DRKERINVEQ  480
HCLARDIVNI IACEGKERVE RHELLGKWKS RLTMAGFRQY PLSSYVNSVI RNLLKCYSDH  540
YTLVEKDGGG MLLGWKHRNL ISASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-172GRAS family protein