PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968468.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 358aa MW: 41368.2 Da PI: 6.7091

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	5.1e-31	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH rFv+ave+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+ XP_024968468.1 63 PRLRWTDDLHLRFVQAVERLGGQERATPKLVLQLMNIKGLHIAHVKSHLQMYRS 116 8****************************************************7 PP
2	Myb_DNA-binding	49.5	9.9e-16	64	115	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++++++v+av++lGg t+k++ + m+ kg+ ++ks++q+y+ XP_024968468.1 64 RLRWTDDLHLRFVQAVERLGGQeraTPKLVLQLMNiKGLHIAHVKSHLQMYR 115 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MERSEETKCS KTSLDSYLDE DGEEESESKE VVELKDGGSC SNSTVEESDK KPPIRPYVRS 60 KMPRLRWTDD LHLRFVQAVE RLGGQERATP KLVLQLMNIK GLHIAHVKSH LQMYRSKKID 120 DPSQVADPRT EDGDRNIYNL SQLPMLHCYN QTYDSAVRYE DAPLYRRDWM HIALRDHGSF 180 EKTKPRFYNM AADRILAINH VGQANRGLQT NHLPISWRIQ KVNDDYFGSR MCEKMKMLQD 240 QYSKLPNSTL KLNRFKVQEH QSNPLDLGYT SPEKHEETKR KASDLNLNLD LNLSLGIHSR 300 NTESLEGSEG EDDEGEEGNL SLSLYSPSFS RNRKRLIRED DHSNDQKAKR ASTLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MERSEETKCS KTSLDSYLDE DGEEESESKE VVELKDGGSC SNSTVEESDK KPPIRPYVRS  60
KMPRLRWTDD LHLRFVQAVE RLGGQERATP KLVLQLMNIK GLHIAHVKSH LQMYRSKKID  120
DPSQVADPRT EDGDRNIYNL SQLPMLHCYN QTYDSAVRYE DAPLYRRDWM HIALRDHGSF  180
EKTKPRFYNM AADRILAINH VGQANRGLQT NHLPISWRIQ KVNDDYFGSR MCEKMKMLQD  240
QYSKLPNSTL KLNRFKVQEH QSNPLDLGYT SPEKHEETKR KASDLNLNLD LNLSLGIHSR  300
NTESLEGSEG EDDEGEEGNL SLSLYSPSFS RNRKRLIRED DHSNDQKAKR ASTLDLTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-54	G2-like family protein