PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968413.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 343aa    MW: 37407.2 Da    PI: 5.5441
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16254290135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  XP_024968413.1 254 CRHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 290
                     *****99999************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MMSEANISNQ RHHQAPTYEP ANLQHHQQQQ GIAINNNDDE GNQHHMVEDV VVEEDDDVAG  60
GEEESIDNPS QIRYDHHNPH HQHHDLRNGV ALEGGMEEMS APPHALYVQD SEIQPLAVGG  120
GGADQLTLSF QGEVYVFDAV SPEKVQAVLL LLGGYEVPTG VPSLGMPPQN QRDLAEFPTR  180
SSQPQRAASL SRFREKRKER CFDKKIRYSV RKEVALRMQR KKGQFTSSKA ISDEAGSASS  240
DWNGGPSQDE ETTCRHCGIS SKSTPMMRRG PAGPRTLCNA CGLKWANKGV LRDLTKVSAS  300
GTQDPAGKPI EQSDGEANNL DAINANAVMV VSNGDTSAVT AER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-87GATA family protein