PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968308.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 297aa MW: 33745.2 Da PI: 8.3451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.3e-16	68	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y +YA++ GF++r+s++k++ r+g+++ + Csk g e+++++ + +rtgCka+ k k +++++++++e +HnH+l XP_024968308.1 68 EMYANYAQKGGFTIRRSTQKTK-RDGSVILKYILCSKAGVVENKRQQ------NMRFQRTGCKACAKFKVIPgTSTFRLYSFEDKHNHALI 151 58************987665.9999*********9997666......9999***********9*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MNKEHNMEEF DSEEDKAIPS CRCNVTADLQ HGNEIETSDG SKFWIPKVED DVKPIVGSVF 60 QSLDNAIEMY ANYAQKGGFT IRRSTQKTKR DGSVILKYIL CSKAGVVENK RQQNMRFQRT 120 GCKACAKFKV IPGTSTFRLY SFEDKHNHAL IRKEDTNLTR TKREFEASKH CDKLAHDAYS 180 VVDYCIGKLS DDKEKLALFV KKIQDLKNEV ETGFLNQPAH KKEDDVKGSF IGISKPEVVE 240 TPSPIGIRNE GCSSEKRLEG SNEKVVTESS KFDRMCKRCW KTTGHDSRNC PLKNVTE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-12	FAR1 family protein