PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968307.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 320aa MW: 36422 Da PI: 7.2262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.8	2.6e-16	91	174	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y +YA++ GF++r+s++k++ r+g+++ + Csk g e+++++ + +rtgCka+ k k +++++++++e +HnH+l XP_024968307.1 91 EMYANYAQKGGFTIRRSTQKTK-RDGSVILKYILCSKAGVVENKRQQ------NMRFQRTGCKACAKFKVIPgTSTFRLYSFEDKHNHALI 174 58************987665.9999*********9997666......9999***********9*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MKSNVDEYDE EHSKATHLEE ESSMNKEHNM EEFDSEEDKA IPSCRCNVTA DLQHGNEIET 60 SDGSKFWIPK VEDDVKPIVG SVFQSLDNAI EMYANYAQKG GFTIRRSTQK TKRDGSVILK 120 YILCSKAGVV ENKRQQNMRF QRTGCKACAK FKVIPGTSTF RLYSFEDKHN HALIRKEDTN 180 LTRTKREFEA SKHCDKLAHD AYSVVDYCIG KLSDDKEKLA LFVKKIQDLK NEVETGFLNQ 240 PAHKKEDDVK GSFIGISKPE VVETPSPIGI RNEGCSSEKR LEGSNEKVVT ESSKFDRMCK 300 RCWKTTGHDS RNCPLKNVTE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	4e-12	FAR1 family protein