PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968276.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 396aa MW: 43057.4 Da PI: 5.8454

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.4	9.5e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C++++e + +C+++ +lC +C H+ H++ XP_024968276.1 4 QCDHCGEARSMVYCRSDAAYLCLSCDRIVHSAnalskrHSR 44 5*************************999955666666765 PP
2	zf-B_box	25.8	2.2e-08	46	89	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + ++ lC++C +H+g H+++ XP_024968276.1 46 LVCDRCNSQPAVVRCIEEKVSLCQNCDWVGHNGsslgsttHSRQ 89 68*****************************9888888888776 PP
3	CCT	58.3	2.8e-20	339	382	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+k RkFeK++rY++RKa+A+ R+RvKGrFvk+ XP_024968276.1 339 RSDAVLRYKEKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAG 382 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MGCQCDHCGE ARSMVYCRSD AAYLCLSCDR IVHSANALSK RHSRTLVCDR CNSQPAVVRC 60 IEEKVSLCQN CDWVGHNGSS LGSTTHSRQT LNCYSGCPSA VELSSIWSFM DSACEQGIGS 120 MSIADNSQGP SRNNNNQDLR EANGIESGNN SNVWTGSSTI RVDNRPQNVV QQAGPINSSQ 180 SKISQSGTED PEPFVDDGFY ADFNMDEVDL SIENYEELFG VGHNDPEHLF AKDGIDSLFG 240 GADSNCQGPY AAKESSTGHG NAVQPACSNA ASADSLMSCK TEPNPCYARQ HSNISFSSLT 300 GESSAGEYQD CGASSMLLMG EPPWCTGGAD QNTTPIGSRS DAVLRYKEKK KMRKFEKRVR 360 YATRKARADV RKRVKGRFVK AGDAYDYDPM SQTRSF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MGCQCDHCGE ARSMVYCRSD AAYLCLSCDR IVHSANALSK RHSRTLVCDR CNSQPAVVRC  60
IEEKVSLCQN CDWVGHNGSS LGSTTHSRQT LNCYSGCPSA VELSSIWSFM DSACEQGIGS  120
MSIADNSQGP SRNNNNQDLR EANGIESGNN SNVWTGSSTI RVDNRPQNVV QQAGPINSSQ  180
SKISQSGTED PEPFVDDGFY ADFNMDEVDL SIENYEELFG VGHNDPEHLF AKDGIDSLFG  240
GADSNCQGPY AAKESSTGHG NAVQPACSNA ASADSLMSCK TEPNPCYARQ HSNISFSSLT  300
GESSAGEYQD CGASSMLLMG EPPWCTGGAD QNTTPIGSRS DAVLRYKEKK KMRKFEKRVR  360
YATRKARADV RKRVKGRFVK AGDAYDYDPM SQTRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-111	CO-like family protein