PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968222.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 286aa MW: 31306 Da PI: 5.4908

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17	1.3e-05	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +e e++ C ++ lC +C ++ H H++v XP_024968222.1 4 QCNVCEMAEATVLCCADEAALCSTCDEKVHAAnklaskHQRV 45 7****99*******************667788888766 PP
2	zf-B_box	30.3	8.5e-10	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s++++C+ ++e +fC +++ llC++C +++H H XP_024968222.1 52 SQMPMCDICQETVGYFFCLEDRALLCRKCDVAIHTAntlvssH 94 6899******9*******************654555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MKIQCNVCEM AEATVLCCAD EAALCSTCDE KVHAANKLAS KHQRVHLSTY NSQMPMCDIC 60 QETVGYFFCL EDRALLCRKC DVAIHTANTL VSSHQRFLLT GVKVGLEAAE LGASTSSMKL 120 HYTKDISDAP KSPSPSIRSV SLSSTDKYSK PEPVQAAGAG DFTPPSLPFA GGSSEDGIQQ 180 WEFDEFLGLT DLNQNYNYID NISSKADSGK LGDSDCEGFG QVPDASWAVP DICSPPTASG 240 LYFHDHYHHH HRLETPAFVP DVCYSAFPDL YPSQQSTSSQ KKRRQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	1e-76	DBB family protein