PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024968214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 38194.6 Da PI: 5.7564 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.6e-18 | 50 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + XP_024968214.1 50 RGPWSPEEDVVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 95 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.8e-17 | 102 | 146 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed +++da++ +G++ W++Ia+ + gRt++ +k++w++ XP_024968214.1 102 RKPFTEAEDRIIIDAHAIHGNK-WASIAKLLR-GRTDNAIKNHWNST 146 789*******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence |
MNEETGHSLD PTISAAVSTG HDDGGGEVDA VMAEVGGGGG GGADKKSKVR GPWSPEEDVV 60 LSELVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPAV ERKPFTEAED RIIIDAHAIH 120 GNKWASIAKL LRGRTDNAIK NHWNSTLRRR CIQPNAYMCV SSTKMEIENN HFDGPKTTSE 180 DTLSNGNMNQ VKAPEYEDGS AMEAEDIPSA DQNEHVPETL PHPTPHYGAF TVYTPPNGRI 240 QNGQLRSVVP REGPLIQASK PESMGFKFLK GYCSECVTPS RCGHGCCSGP ENNAASHSLL 300 GPEFVEYEEL SPLASQELAA IATDLNAIAW IKSGLENPGA SQRQTPHISL PTFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-101 | MYB family protein |