PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968211.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 356aa MW: 40621.6 Da PI: 6.3141

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l+d+++++G+g +W + ++++g++R++k+c++rw++yl XP_024968211.1 14 KGPWSSEEDAKLKDYIEKYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.5	5.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_024968211.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRAPCCDKT NVKKGPWSSE EDAKLKDYIE KYGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSQANRLS GSSQDPKDSS GVETLSNSAV ERLQLHMQLQ SLENPNFSHY DHNTSMWPCK 180 LNPIQEKMMH SLQLVNESSN ALMMQNFSPA TPQKIEYYAQ SNNPLQQEYS QISNMMINGM 240 ENSMGINIPE SSSVLVPESD CTKQQPSMEL QQCWEFQAEI DELLSNKGAT PLEGQMNDQF 300 DCFKDMHGAK DSMTWWSNEF EANSASSNSW DSTDVLDHKQ TEMKFQELVQ GQHRVQ

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRAPCCDKT NVKKGPWSSE EDAKLKDYIE KYGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSQANRLS GSSQDPKDSS GVETLSNSAV ERLQLHMQLQ SLENPNFSHY DHNTSMWPCK  180
LNPIQEKMMH SLQLVNESSN ALMMQNFSPA TPQKIEYYAQ SNNPLQQEYS QISNMMINGM  240
ENSMGINIPE SSSVLVPESD CTKQQPSMEL QQCWEFQAEI DELLSNKGAT PLEGQMNDQF  300
DCFKDMHGAK DSMTWWSNEF EANSASSNSW DSTDVLDHKQ TEMKFQELVQ GQHRVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-88	MYB family protein