PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968184.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 434aa MW: 49135.5 Da PI: 5.5525

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.3e-16	87	176	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps+v+ +l +pkkf++ h +k + +++l de+ ++++ k+ ++k++ l++GW++F a++L egD +vF+l+++ +f +v XP_024968184.1 87 FVKPMLPSHVTGGFWLGFPKKFCDVHL-PK-HDEMVVLVDEDQQEFNTKYLVDKTG----LSGGWRGFSIAHKLLEGDALVFQLIEHWKF--KVY 173 89*******************8884.33.3459***********888888....**********************987666..666 PP EE- CS B3 96 vfr 98 ++r XP_024968184.1 174 IVR 176 665 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MAIAPQSTTP LCSKWKQTKE VKIKKRFLQQ KSSFPKQVNY DLASNLIISY DPKVAASAQP 60 PDSQAKSAAI ERATEVQASL PSELPSFVKP MLPSHVTGGF WLGFPKKFCD VHLPKHDEMV 120 VLVDEDQQEF NTKYLVDKTG LSGGWRGFSI AHKLLEGDAL VFQLIEHWKF KVYIVRVNGL 180 NEIDGALGLL NLVPCGMNVC RIKKDSRNPQ RAEDMDIDLH QNDIQERGLV TYDQSGDDGE 240 YIDSEVSEGL RFSQSVLEFK DIKGIDDFSI VMDGLIIDSE IPKHFQIKYY DLCCSQKTYL 300 HENLLKGLNV QLAVGIILET VTIADAIKAC KVTTTRDNFE TWDKTLKAFE EVGMRVGFLQ 360 DRISKLIGLL FESEEILEAK RNEQVKAEDE MRVMNQKLCG VREAIKNLNV EIESLEMKCQ 420 KLKPVFLKEA NAPW

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MAIAPQSTTP LCSKWKQTKE VKIKKRFLQQ KSSFPKQVNY DLASNLIISY DPKVAASAQP  60
PDSQAKSAAI ERATEVQASL PSELPSFVKP MLPSHVTGGF WLGFPKKFCD VHLPKHDEMV  120
VLVDEDQQEF NTKYLVDKTG LSGGWRGFSI AHKLLEGDAL VFQLIEHWKF KVYIVRVNGL  180
NEIDGALGLL NLVPCGMNVC RIKKDSRNPQ RAEDMDIDLH QNDIQERGLV TYDQSGDDGE  240
YIDSEVSEGL RFSQSVLEFK DIKGIDDFSI VMDGLIIDSE IPKHFQIKYY DLCCSQKTYL  300
HENLLKGLNV QLAVGIILET VTIADAIKAC KVTTTRDNFE TWDKTLKAFE EVGMRVGFLQ  360
DRISKLIGLL FESEEILEAK RNEQVKAEDE MRVMNQKLCG VREAIKNLNV EIESLEMKCQ  420
KLKPVFLKEA NAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-45	B3 family protein