PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024968047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19567.1 Da PI: 8.1592 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.6 | 1.4e-45 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la XP_024968047.1 20 PCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLA 114 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++e XP_024968047.1 115 VSQAE 119 98876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MKDSGSSGGG AGRKQGAASP CAACKLLRRR CSQDCVFAPY FPADEPQKFA SVHKVFGASN 60 VNKMLQELPE HHRGDAVSSM VYEANARIRD PVYGCVGAIS SLQQQIDVLQ AQLAVSQAEV 120 VHMRMRQFSS SPVNQSPENI SPPSRHHPSH TPTRSLFGMD MVVDHQSHMG MGESLWSSCN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-64 | LBD family protein |