PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968040.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 376aa MW: 41170.8 Da PI: 7.152

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	237	275	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_024968040.1 237 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 275 6678889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MNRGNVLQSS PVQQMLAGGP NSWWSMMGSS RPSPPPPPPQ SPFFATSAQP HFFPHQYAPA 60 PPPSLSPWHD NQDFPDSLSQ LLMGGLVGED DKSALSHMQQ VKKLENWEEQ LLHHHHHQQQ 120 QQQQHHSSPN VNSMVESAVK QENSLNYGSS YGHGNADFHG VKSNNWSNPM IPVSSPNSCI 180 SSLSNNMLDF STTISNKADG RHPPPDRSSE CNSTATGGAS KKAKIQPSSN QSTFKVRKEK 240 LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQSQIEA LSLPYLGSGS GNMRHPQHSV 300 QQGERNCLFP EDPGQLLNDS CMKLKGSVLD QDSHEEPKIK DLRSRGLCLV PVSCTMQVGS 360 DNGADYWAPA LNGGFR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MNRGNVLQSS PVQQMLAGGP NSWWSMMGSS RPSPPPPPPQ SPFFATSAQP HFFPHQYAPA  60
PPPSLSPWHD NQDFPDSLSQ LLMGGLVGED DKSALSHMQQ VKKLENWEEQ LLHHHHHQQQ  120
QQQQHHSSPN VNSMVESAVK QENSLNYGSS YGHGNADFHG VKSNNWSNPM IPVSSPNSCI  180
SSLSNNMLDF STTISNKADG RHPPPDRSSE CNSTATGGAS KKAKIQPSSN QSTFKVRKEK  240
LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQSQIEA LSLPYLGSGS GNMRHPQHSV  300
QQGERNCLFP EDPGQLLNDS CMKLKGSVLD QDSHEEPKIK DLRSRGLCLV PVSCTMQVGS  360
DNGADYWAPA LNGGFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-91	bHLH family protein