PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024968023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26554.2 Da PI: 4.8259 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.9e-14 | 44 | 87 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++Lq XP_024968023.1 44 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQMLQ 87 57*********************66......******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MEAYWESFLQ ADDCSWGILE ETFSGYYSSS PDGPQSSATS KNIVSERNRR KKLNDRLFAL 60 RAVVPNISKM DKASIIKDAI DYIQMLQDQE RTIQAELMEL ESRKLELESL DFCHETEFLS 120 MERSKKKKLE QAFDSSGSRT YPIQVIQLSV SYVGEKTVLV SLKCSKRRDT IVKLCEVFES 180 LKLKIVTANI SSFSESLFNT LFVQADEKET DILRVQIEAA ISALNDPQSP MSM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 122 | 128 | ERSKKKK |
2 | 162 | 168 | LKCSKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-75 | bHLH family protein |