PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967785.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family CO-like
Protein Properties Length: 303aa    MW: 34116.6 Da    PI: 8.3297
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-072359438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    + C+ +++  + lfC++ + ++C  C ++ H+   H+
  XP_024967785.1 23 KLCDSCDSAAALLFCRKHRAFMCMACDVKLHRHmrHD 59
                    68*******9********************8445576 PP
2zf-B_box27.56.6e-0960106242
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     + ++C+ +e+ ++ + C+ ++  lC +C + +H+       H+++p+
  XP_024967785.1  60 RVWMCEVCEQAPACFNCKADDAALCVTCDTDIHSAnplarrHERIPV 106
                     5789*****************************66889999999885 PP
3CCT67.73.2e-23226269144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRYkeKrk+RkFeKkirY+sRKa+Ae RpR+KGrF+k++
  XP_024967785.1 226 REARVLRYKEKRKKRKFEKKIRYASRKAYAEMRPRIKGRFAKRT 269
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MVENGGASGG AKCFPTGWHV ARKLCDSCDS AAALLFCRKH RAFMCMACDV KLHRHMRHDR  60
VWMCEVCEQA PACFNCKADD AALCVTCDTD IHSANPLARR HERIPVVPFY DSAEDALVNS  120
TAEVKHQSQF RDSVTDGVVP VQTTVPATNF LDVQRVDHQS PGTPYEIDFT RSTTNSNNKS  180
NSQSHNHNVS CSSMEAGVVP EQKSISHPLM VAGETQITKR LSGMDREARV LRYKEKRKKR  240
KFEKKIRYAS RKAYAEMRPR IKGRFAKRTE STTELDVDRW LLTAECNTNG YGAEEEYGVF  300
PSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-59CO-like family protein