PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967784.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 374aa MW: 41778.9 Da PI: 7.8158

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.1	3.1e-07	23	59	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ +++ + lfC++ + ++C C ++ H+ H+ XP_024967784.1 23 KLCDSCDSAAALLFCRKHRAFMCMACDVKLHRHmrHD 59 68*****9******************8445576 PP
2	zf-B_box	27	9.2e-09	60	106	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ + C+ ++ lC +C + +H+ H+++p+ XP_024967784.1 60 RVWMCEVCEQAPACFNCKADDAALCVTCDTDIHSAnplarrHERIPV 106 5789*****************************66889999999885 PP
3	CCT	67.2	4.4e-23	297	340	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeKkirY+sRKa+Ae RpR+KGrF+k++ XP_024967784.1 297 REARVLRYKEKRKKRKFEKKIRYASRKAYAEMRPRIKGRFAKRT 340 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MVENGGASGG AKCFPTGWHV ARKLCDSCDS AAALLFCRKH RAFMCMACDV KLHRHMRHDR 60 VWMCEVCEQA PACFNCKADD AALCVTCDTD IHSANPLARR HERIPVVPFY DSAEDALVNS 120 TAGNLLHPVS GYGNNDQLNS SVAKEDNNDS WGVPTTTNVN VKFPTSTSQT DMKSIDLFAA 180 ADRIFDFGFP ITTEVKHQSQ FRDSVTDGVV PVQTTVPATN FLDVQRVDHQ SPGTPYEIDF 240 TRSTTNSNNK SNSQSHNHNV SCSSMEAGVV PEQKSISHPL MVAGETQITK RLSGMDREAR 300 VLRYKEKRKK RKFEKKIRYA SRKAYAEMRP RIKGRFAKRT ESTTELDVDR WLLTAECNTN 360 GYGAEEEYGV FPSF

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MVENGGASGG AKCFPTGWHV ARKLCDSCDS AAALLFCRKH RAFMCMACDV KLHRHMRHDR  60
VWMCEVCEQA PACFNCKADD AALCVTCDTD IHSANPLARR HERIPVVPFY DSAEDALVNS  120
TAGNLLHPVS GYGNNDQLNS SVAKEDNNDS WGVPTTTNVN VKFPTSTSQT DMKSIDLFAA  180
ADRIFDFGFP ITTEVKHQSQ FRDSVTDGVV PVQTTVPATN FLDVQRVDHQ SPGTPYEIDF  240
TRSTTNSNNK SNSQSHNHNV SCSSMEAGVV PEQKSISHPL MVAGETQITK RLSGMDREAR  300
VLRYKEKRKK RKFEKKIRYA SRKAYAEMRP RIKGRFAKRT ESTTELDVDR WLLTAECNTN  360
GYGAEEEYGV FPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	4e-76	CO-like family protein