PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967727.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 210aa    MW: 22623.6 Da    PI: 6.9666
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.11.4e-286106196
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l++ +     +++q++++ +v+k+FG++ ++++l+++pe +r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+
  XP_024967727.1   6 SCNGCRVLRKGCNENCILRQSLcaiesAQAQANATVFVAKFFGRAGLMSFLSSVPEYQRPALFQSLLSEACGRTVNPVNGAVGLLWTGNWHVCQS 100
                     6*********************555444466799************************************************************* PP

          DUF260  91 kaelal 96 
                     ++e+ l
  XP_024967727.1 101 AVETIL 106
                     998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSTMSCNGC RVLRKGCNEN CILRQSLCAI ESAQAQANAT VFVAKFFGRA GLMSFLSSVP  60
EYQRPALFQS LLSEACGRTV NPVNGAVGLL WTGNWHVCQS AVETILRGGS ISAMPELFPV  120
GATQVMAESD NASEAINCNF DDVANLIPEN LELRLSRSGL KEEDARRSSG NGRWTEKLRT  180
AKSSDVSETT TSESGTGSAC RDTKLLRLFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-64LBD family protein