PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967722.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 350aa MW: 38638.3 Da PI: 8.8918

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.8	2.4e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkk+v++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ XP_024967722.1 15 LPPGFRFHPTDEELVVHYLKKRVASAPLPV-AIIAEVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAANSGYWKATGTDKPVMTS 108 79**************************.88***********8888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl XP_024967722.1 109 gGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 77788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MESTDSSTGS QLPQLPPGFR FHPTDEELVV HYLKKRVASA PLPVAIIAEV DLYKFDPWEL 60 PGKATFGEQE WYFFSPRDRK YPNGARPNRA ANSGYWKATG TDKPVMTSGG TQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLADNKTISK PHGCDPTKQK GSLRLDDWVL CRIYKKNNMQ 180 RPMDSDGGDH QHNITGMLAS IPPSISLAGT GHHGTIIRPT AGHVGYNTML ENHEHNLMFD 240 TRINSNDTDI NTNVNTSNLL PVKRSLPALF WNEDGGTSGG NTGNNSSSTY TKRFLTESNS 300 DVSVMAATRT TEENSGSIAS LLSQQAMLGS LEDGVFRQPY QLPAGMNWYS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MESTDSSTGS QLPQLPPGFR FHPTDEELVV HYLKKRVASA PLPVAIIAEV DLYKFDPWEL  60
PGKATFGEQE WYFFSPRDRK YPNGARPNRA ANSGYWKATG TDKPVMTSGG TQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLADNKTISK PHGCDPTKQK GSLRLDDWVL CRIYKKNNMQ  180
RPMDSDGGDH QHNITGMLAS IPPSISLAGT GHHGTIIRPT AGHVGYNTML ENHEHNLMFD  240
TRINSNDTDI NTNVNTSNLL PVKRSLPALF WNEDGGTSGG NTGNNSSSTY TKRFLTESNS  300
DVSVMAATRT TEENSGSIAS LLSQQAMLGS LEDGVFRQPY QLPAGMNWYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-112	NAC family protein