PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967413.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 355aa MW: 40435.2 Da PI: 4.9488

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.5	5.8e-35	49	140	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sws+ g+sfvvld+ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ + weF+++ F +g+++ l++ XP_024967413.1 49 FLTKIYDMVEDQTIDHIVSWSRGGQSFVVLDPYAFSTNLLPRHFKHNNFSSFVRQLNTYGFRKIDPDI---------WEFANEAFVRGQRHVLKN 134 9*************************************************************9876.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr++ XP_024967413.1 135 IKRRRA 140 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MNPFYSVVKE EYPLSDGGSS SGTQVNKQSM MVQIPQPMEG LHDAGPPPFL TKIYDMVEDQ 60 TIDHIVSWSR GGQSFVVLDP YAFSTNLLPR HFKHNNFSSF VRQLNTYGFR KIDPDIWEFA 120 NEAFVRGQRH VLKNIKRRRA PNSQALFPQG VGSGIEVGTF GLDEVGRLKH EKQVLTMELM 180 KLRQQQQNTR AQLQAMEVRL QGTEKKQQKM MSFLAKAMQN PDFIQKLVQN AKRKELEEAF 240 MNHTRELRGV NNGEPSQTSG GSKLIKSEPE EFGDSSGFQV SELEALALEI QGFGRSKRNQ 300 EEERDEFEGG ERELDDEFWE ELFSERSDEQ GGTITGDEDV DFLAEKLDFL GSNPK

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MNPFYSVVKE EYPLSDGGSS SGTQVNKQSM MVQIPQPMEG LHDAGPPPFL TKIYDMVEDQ  60
TIDHIVSWSR GGQSFVVLDP YAFSTNLLPR HFKHNNFSSF VRQLNTYGFR KIDPDIWEFA  120
NEAFVRGQRH VLKNIKRRRA PNSQALFPQG VGSGIEVGTF GLDEVGRLKH EKQVLTMELM  180
KLRQQQQNTR AQLQAMEVRL QGTEKKQQKM MSFLAKAMQN PDFIQKLVQN AKRKELEEAF  240
MNHTRELRGV NNGEPSQTSG GSKLIKSEPE EFGDSSGFQV SELEALALEI QGFGRSKRNQ  300
EEERDEFEGG ERELDDEFWE ELFSERSDEQ GGTITGDEDV DFLAEKLDFL GSNPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	LKNIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	9e-89	HSF family protein