PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967379.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 319aa    MW: 37212.2 Da    PI: 6.5254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.44.2e-37421332102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sws++g+sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ +          weF+++ F +g++++l++
  XP_024967379.1  42 FLTKIYEMVDDQSMDHIVSWSREGQSFVVWDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDL---------WEFANEGFLRGQRHMLKN 127
                     9***************************************************************9987.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k+
  XP_024967379.1 128 IKRRKT 133
                     ****86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MNHFYPVVKE EYPSAVSSAD QPVMADMPQP MEGLHDAGPP PFLTKIYEMV DDQSMDHIVS  60
WSREGQSFVV WDPHAFSTNL LPRYFKHNNF SSFVRQLNTY GFRKIDPDLW EFANEGFLRG  120
QRHMLKNIKR RKTPPQALVP QQATAPCRDH GKLRIDNEVK RLKRDKQILM MELVRLRQQQ  180
QNTRSHLQAM ELRLQGTEKK QQKMMGFLAK AMQNPDFVQK LVRHGKRKDL EETIIKKRRR  240
PIDHGEGSKL IKAEPEESEM SELDALALEM QGFGRAKRNQ EETETPNDLD GFEGGDRELD  300
EEFWEELFNE EFGITGNEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKNIKRR
2160203KRLKRDKQILMMELVRLRQQQQNTRSHLQAMELRLQGTEKKQQK
3226240KRKDLEETIIKKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-106HSF family protein