PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967175.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 310aa MW: 35882.9 Da PI: 7.403

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79	4.5e-25	82	125	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_024967175.1 82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 125 79***************************************998 PP
2	QLQ	58.1	2.7e-20	14	49	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+l+yKy+++++P+Pp+Ll+ i++ XP_024967175.1 14 PFTSSQWQELEHQALVYKYMISGMPIPPDLLFSIKR 49 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
METMRNHDSN SRFPFTSSQW QELEHQALVY KYMISGMPIP PDLLFSIKRS LDPSTKLILH 60 HQSPHQSIGW NCFQMGFGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS 120 RKPVEVNLSS TQPLSMCNKP PAFLYPQLSS SSCSRPVLSS HQDRMFMLES RAYYSHSEKD 180 QSYGMKEDQA DEHPFFSENS CGTMSASMAD SWHLEPLAIN NSSSSSSKQQ TFSDYKNGYS 240 YDLQLQNTPK QQQQNQDQLG LEIERKDEPQ KMMHHFFDES PRDANDSSST QLSISIPSCA 300 HDFFLTHNDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-60	GRF family protein