PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967174.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 339aa MW: 38934.7 Da PI: 8.6178

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.2e-25	111	154	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_024967174.1 111 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 154 79***************************************998 PP
2	QLQ	50.4	6.7e-18	47	78	6	37
QLQ 6 aQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Q+q+L++Q+l+yKy+++++P+Pp+Ll+ i++ XP_024967174.1 47 SQWQELEHQALVYKYMISGMPIPPDLLFSIKR 78 7***************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MWNIILGGGT NGSNLQVGNV KTRREKTKAL LVRTVLCHFN ASIRIKSQWQ ELEHQALVYK 60 YMISGMPIPP DLLFSIKRSL DPSTKLILHH QSPHQSIGWN CFQMGFGRKI DPEPGRCRRT 120 DGKKWRCSKE AYPDSKYCER HMHRGRNRSR KPVEVNLSST QPLSMCNKPP AFLYPQLSSS 180 SCSRPVLSSH QDRMFMLESR AYYSHSEKDQ SYGMKEDQAD EHPFFSENSC GTMSASMADS 240 WHLEPLAINN SSSSSSKQQT FSDYKNGYSY DLQLQNTPKQ QQQNQDQLGL EIERKDEPQK 300 MMHHFFDESP RDANDSSSTQ LSISIPSCAH DFFLTHNDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-57	GRF family protein