PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967147.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 498aa    MW: 56338.9 Da    PI: 7.4197
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.71e-1271494981374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+ vs++dl +aq l+++l++++s +g+p+qRl ay++e+L arl++s+s++yk+  p            + +++++e++P++kf++
  XP_024967147.1 149 LKQVLIACAKSVSNNDLFNAQYLISELRQMVSVAGEPIQRLGAYMLEGLVARLSSSGSTIYKSELP------------SDMHILYEICPYFKFGY 231
                     5799***************************************************99999964333............34569************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     + aN aI ea++ e+r+HiiDf i qG QW++L+qa+a+Rp+gpp++RiTg+++    s+ +l+ +g+rL k+A++ +vpfef++       ++ 
  XP_024967147.1 232 MSANGAIAEAMKDEKRIHIIDFRIVQGSQWVPLIQAFAKRPGGPPHIRITGFHD----STSKLHIVGKRLCKLAKAYNVPFEFHT-------EVG 315
                     ******************************************************....99************************9.......899 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e++r +pgE+laVn+++ lhr++desvs++++rd+vL+lvks++Pkvv++veqe+++n+++F  rflealeyy a+f+s++ +lpr++++ri+v
  XP_024967147.1 316 IESFRAQPGESLAVNFAFVLHRMPDESVSTQNHRDRVLRLVKSMNPKVVTLVEQESNTNTAPFYPRFLEALEYYHAMFESIDITLPRQHKKRINV 410
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++l+r++vn++aceg+er+erhe l+kW+ r+++aGF+p p+s  ++ ++k+ll++++++ yrvee++g+l+lgW++r Lv+ +aW+
  XP_024967147.1 411 EQHCLARDVVNIIACEGNERVERHELLGKWKLRFSMAGFSPSPMSPVVNGTIKRLLNNYSER-YRVEERDGALYLGWMNRDLVASCAWK 498
                     ************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MQLGFVTNSS MQASEHNRSA TSNAFYHQSM QQIEAFCNPQ LQCLDHLSHG TNYFTKSDSY  60
CTLESSSANG SCTTVYYSPS TLSSSQNESH SSDAHDFRYR LRQLETVMLG DSDFDDDAGN  120
GKSFAGGVVD MPDVNIWKEV MGCFPRRDLK QVLIACAKSV SNNDLFNAQY LISELRQMVS  180
VAGEPIQRLG AYMLEGLVAR LSSSGSTIYK SELPSDMHIL YEICPYFKFG YMSANGAIAE  240
AMKDEKRIHI IDFRIVQGSQ WVPLIQAFAK RPGGPPHIRI TGFHDSTSKL HIVGKRLCKL  300
AKAYNVPFEF HTEVGIESFR AQPGESLAVN FAFVLHRMPD ESVSTQNHRD RVLRLVKSMN  360
PKVVTLVEQE SNTNTAPFYP RFLEALEYYH AMFESIDITL PRQHKKRINV EQHCLARDVV  420
NIIACEGNER VERHELLGKW KLRFSMAGFS PSPMSPVVNG TIKRLLNNYS ERYRVEERDG  480
ALYLGWMNRD LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein