PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024967058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 27536.6 Da PI: 6.6054 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +lv++++ +G +W + + + g+ Rt+k+c++rw +yl XP_024967058.1 14 KGSWSVEEDRKLVNYINNYGISNWCKMSIYAGLARTGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++++++++ lG++ W+ Iar+++ gR+++++k++w+++l XP_024967058.1 67 RGNFTNEEEKIILHYHSVLGNK-WSMIAREVP-GRSDNEIKNYWHTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MRHPSYDLQS GLRKGSWSVE EDRKLVNYIN NYGISNWCKM SIYAGLARTG KSCRLRWMNY 60 LDPIIKRGNF TNEEEKIILH YHSVLGNKWS MIAREVPGRS DNEIKNYWHT HLKKRSITQG 120 HPVPITKPKE MTKSSDVDNV ESFVKSLVLN SADHFFARTF SDKSSTSDHE QQKVEFEETS 180 YYDISSPGTI QDFKSFRQQL YFASNTDQDS ELQNPLQDPT SDHEFFVDDS YNLQDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 2e-49 | MYB family protein |