PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966976.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 1023aa MW: 113452 Da PI: 7.3228

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.2	1e-06	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e++ +++ gLt +qV+ +F +R + ++ XP_024966976.1 71 KRPRDLLNPKAIKYMQSIFSVKDEISKKEIRAISALFGLTATQVRDFFTGQRSRIRR 127 799**************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence
MAISNANHQL ALVVSSNTTT SYEGLLESQK ELLSKQIYEL QNIVSKQCKL TGVNPLSQEM 60 AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDEISKKEI RAISALFGLT ATQVRDFFTG 120 QRSRIRRFIR LSREKAIQSA EDVQEQDGSL SSNLDAQNHP VPLNSMGPPS IEAPSCSTQD 180 EVLPDTDDSD KYFIDNIFSL LRKEETFSGQ VKLMEWILQI KNASVLYWFL TNGGVMILAT 240 WLSQAAIEEQ TTVLHTILRV LCHLPLHKSL PAHMSAILQS VNKLRFYRGP DISNRAKSLL 300 SRWSKMFARS QAMRRPNANI SPVDAQNEML LKQSIGEIME NESLEARIDN SGAPYLLQEN 360 SENSRNLGSS QSIKLLTAPS DESNIKLLRG VSHTRERRKV QLVEQPGQKT AGRGPQVTRV 420 VSTTQGRPLS ADDIQKAKMR AQFMRSKYGE SYVNPRVKTE VSRAASTSQA AMTPPSSKAA 480 PIHPKVEEPA TSTSGMTQSA AKSDFQPKAE EHKKPAILAS ADEVREATVF GKGNMELEEP 540 VWKKCKRFQI SWVNPPEMKI DKEWSVCSGE NSKEVDVQNN RIKREKEVFY ERVLEIPSNP 600 KEPWDLEMDY DDSLTPEIPT EQLPDDDDDN MVSERVGMTP TQMNIDSDVA SGYAAGTSTN 660 GGDNNNRSMP EPDLELLAVL LKNPEIVFAL TAGQGGNLNG EQMVKLLDAI KANAARGGSI 720 GSLVNGLVEK KAEEKVEVSL PSPTPSSNPV TSGWRPESAK NQFSRQSMTV NGEAYAIPAV 780 NFQETGLLTP ATITQQAFAP INHQRFPDLP LDQRNVSDFV PDRRSIPTAV SGLPFRGAAT 840 ANLTQQSISP SIHQRFSDMV PDHGNIPAAG HGPPSSGGYF PSTHGGSQIS SQRRVISEPR 900 QSLVQSWSGR ESLGSSPYSP AERNSNLNTY STQEFMHPPP DLRAGPSWGR NGGHRDEPGF 960 ESWSPDNSPV RSHEYVDSWD YSDPPNRSYN NYRLDMSAMQ HDPSRYRDRG GRNDGSRWRD 1020 RRR

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence

MAISNANHQL ALVVSSNTTT SYEGLLESQK ELLSKQIYEL QNIVSKQCKL TGVNPLSQEM  60
AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDEISKKEI RAISALFGLT ATQVRDFFTG  120
QRSRIRRFIR LSREKAIQSA EDVQEQDGSL SSNLDAQNHP VPLNSMGPPS IEAPSCSTQD  180
EVLPDTDDSD KYFIDNIFSL LRKEETFSGQ VKLMEWILQI KNASVLYWFL TNGGVMILAT  240
WLSQAAIEEQ TTVLHTILRV LCHLPLHKSL PAHMSAILQS VNKLRFYRGP DISNRAKSLL  300
SRWSKMFARS QAMRRPNANI SPVDAQNEML LKQSIGEIME NESLEARIDN SGAPYLLQEN  360
SENSRNLGSS QSIKLLTAPS DESNIKLLRG VSHTRERRKV QLVEQPGQKT AGRGPQVTRV  420
VSTTQGRPLS ADDIQKAKMR AQFMRSKYGE SYVNPRVKTE VSRAASTSQA AMTPPSSKAA  480
PIHPKVEEPA TSTSGMTQSA AKSDFQPKAE EHKKPAILAS ADEVREATVF GKGNMELEEP  540
VWKKCKRFQI SWVNPPEMKI DKEWSVCSGE NSKEVDVQNN RIKREKEVFY ERVLEIPSNP  600
KEPWDLEMDY DDSLTPEIPT EQLPDDDDDN MVSERVGMTP TQMNIDSDVA SGYAAGTSTN  660
GGDNNNRSMP EPDLELLAVL LKNPEIVFAL TAGQGGNLNG EQMVKLLDAI KANAARGGSI  720
GSLVNGLVEK KAEEKVEVSL PSPTPSSNPV TSGWRPESAK NQFSRQSMTV NGEAYAIPAV  780
NFQETGLLTP ATITQQAFAP INHQRFPDLP LDQRNVSDFV PDRRSIPTAV SGLPFRGAAT  840
ANLTQQSISP SIHQRFSDMV PDHGNIPAAG HGPPSSGGYF PSTHGGSQIS SQRRVISEPR  900
QSLVQSWSGR ESLGSSPYSP AERNSNLNTY STQEFMHPPP DLRAGPSWGR NGGHRDEPGF  960
ESWSPDNSPV RSHEYVDSWD YSDPPNRSYN NYRLDMSAMQ HDPSRYRDRG GRNDGSRWRD  1020
RRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein