PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966758.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 345aa MW: 38766.4 Da PI: 9.2582

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966758.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.8	3.5e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+++++y+++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ XP_024966758.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIADINLYSFDPWELPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT- 106 79*************************9.89***********8777899*********************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl XP_024966758.1 107 GGRRVGIKKALVFYVGKAPKGNKTNWIMHEYRL 139 999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGLPVTDPMT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIADIN LYSFDPWELP 60 SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTGGRR VGIKKALVFY 120 VGKAPKGNKT NWIMHEYRLS EPPRKTGSSR LDDWVLCRIY KKNSSAQKQI SGAPSTEQSH 180 GSSSSSSSQF DDVLESLPEI QDKFFNLPRV NSIKTFQQED QKLNLQKYDS GNYDWASIAA 240 FGLPETQAPP QLNTTTATAT ATATATAMNN VFPSMSPTYT TDIKFGRSLE DEVESGIRSQ 300 RVENPGYFQS NLNPFAHSQS QSFSKTMDPY GIRYPTQQAS LGFRQ

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGLPVTDPMT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIADIN LYSFDPWELP  60
SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTGGRR VGIKKALVFY  120
VGKAPKGNKT NWIMHEYRLS EPPRKTGSSR LDDWVLCRIY KKNSSAQKQI SGAPSTEQSH  180
GSSSSSSSQF DDVLESLPEI QDKFFNLPRV NSIKTFQQED QKLNLQKYDS GNYDWASIAA  240
FGLPETQAPP QLNTTTATAT ATATATAMNN VFPSMSPTYT TDIKFGRSLE DEVESGIRSQ  300
RVENPGYFQS NLNPFAHSQS QSFSKTMDPY GIRYPTQQAS LGFRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-122	NAC family protein