PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966658.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 376aa MW: 41960.2 Da PI: 6.4289

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.7e-10	195	242	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_024966658.1 195 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 242 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MNGASPECHN NIPGNTTGGG GGEVSVFERQ QARMKWQQQQ QMLFNGNDHQ VPNMLSAMQP 60 SGLIGNFAIK PDPGIENGWP DFSYGDQLGY GSGFDHMNQN THSRMTSFRP PLMADQTILQ 120 KNSSSASLSP KKRKAHENQK LKVVSEENGV KEKELKGCSD GDSTETSSKE KPKLTEAKKQ 180 EYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CNKITGKAGM LDEIINYVQS 240 LQRQVEFLSM KLATVHPRLD FDIDSLITTE MFVSGEVSAV GYSSEMANST YLQLNSLLEM 300 GTNPIDMVLR SIGSPVSIPE TFVVSSCFNQ IQPTVTWDAD LQNLYRMELQ HDTSTIPFQT 360 QKFTGSYEGS NLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MNGASPECHN NIPGNTTGGG GGEVSVFERQ QARMKWQQQQ QMLFNGNDHQ VPNMLSAMQP  60
SGLIGNFAIK PDPGIENGWP DFSYGDQLGY GSGFDHMNQN THSRMTSFRP PLMADQTILQ  120
KNSSSASLSP KKRKAHENQK LKVVSEENGV KEKELKGCSD GDSTETSSKE KPKLTEAKKQ  180
EYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CNKITGKAGM LDEIINYVQS  240
LQRQVEFLSM KLATVHPRLD FDIDSLITTE MFVSGEVSAV GYSSEMANST YLQLNSLLEM  300
GTNPIDMVLR SIGSPVSIPE TFVVSSCFNQ IQPTVTWDAD LQNLYRMELQ HDTSTIPFQT  360
QKFTGSYEGS NLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	7e-62	bHLH family protein