PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966458.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 1136aa MW: 126804 Da PI: 9.331

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	44	76	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT eE e++++a +++G++ Wk++a+++ +R XP_024966458.1 44 PWTDEEVERFYKAYRKYGKD-WKKVAAMVR-TRNS 76 8***************99.******9.7765 PP

Sequence ? help Back to Top
Protein Sequence Length: 1136 aa Download sequence
MAPTRKSRSV NKRYSDYVEV SPSKSVANKS GRQKRKLSDM IGSPWTDEEV ERFYKAYRKY 60 GKDWKKVAAM VRTRNSVMVE ALYTMNRAYL SLPEGTASVV GFIAMVSDHY NALEGSNSDH 120 DDNEFPKLIP KPRKRSHGLF QQNGGEDQLQ SRLAGSSDRP MSQLKRRESD GCTVRKRTPR 180 FPINHSSRRD NSGFYVSPYK RSQKREVDDV AHGAALALTE ASQRGGSPQV SQSPYRIDRM 240 KTTPLKGRQK TLDTARTKLH GNLIDEDCFE GSSGSGGAEN GAYPRDASIF MDTENVAAED 300 VHQKGRKFYS QKDDNEFDDG GEACSGTGEG LAVGSIGGKF DIEVADENIE QSSSQGKRKR 360 NKKLYFRDET SGLDALQTLA DLSLMIQSSK VDSESPVLKE DKPPTGISDN NVSGRPGSNG 420 HRRHKTKMSV DKEKLLNEFP RADASKSGKS KPGRESKVDY KALSEGKQLD QSINKSWKRK 480 NKSSSFEALF NDEEKCASKP LCANQDNVPS KNCKSTRLVE YSSSNSNTSR TGADSAVSTA 540 LLPASDGVDL PFKRRNKRKV DPNRISNHGE MKLAKINLKD QPNKKIEPQE GTLYLKDKAF 600 CCLSSCMVRR WSTYEWFYSA IDYPWFAKRE FVEYLNHVGL GHIPRLTKVE WGVIRSSLGK 660 PRRFSRNFLH EEREKLWQYR ESVRKHYTEL RSGIREGLPT DLARPLSVGQ RVIALHPESR 720 EVHDGSVLTV DHDKCRIQFD RPELGVAFVK DIDCMPLNLL DNMPEALRRE SSALYRFSMN 780 SGEPRLPQSA TGSSMLYTSR EHFEQSPTIA LMSQRPGHNG SGAPAKAEDN VISQHAPNAP 840 PCSVSQIQAK ETDIRALSEL TRALDKKEAI LAELKLVNDG LMSHENETGI AMKVSESFKK 900 EYAMVLLQLK EASDQVSSAL LNLRQRNTYP GNPLPPWQKL HSSSSGIIGP TSSADNFPSN 960 NQLAPSVVEI VNNSRLEAHK LVHTAVQAMS KIKVEQNVLS SVVAVLDSLG VGKNPIEYGS 1020 STIRHSEQPN GGTYKHKLNC TPDTSLNNHA SDSKLQRESD ETEATIPFEL IVSCVATYHM 1080 IQMCTERQYP PADVVQMLDS AFTNLHPHCP QNLPIFREIQ MCMGRVKTQI LALVPS

Sequence ? help Back to Top

Protein Sequence Length: 1136 aa Download sequence

MAPTRKSRSV NKRYSDYVEV SPSKSVANKS GRQKRKLSDM IGSPWTDEEV ERFYKAYRKY  60
GKDWKKVAAM VRTRNSVMVE ALYTMNRAYL SLPEGTASVV GFIAMVSDHY NALEGSNSDH  120
DDNEFPKLIP KPRKRSHGLF QQNGGEDQLQ SRLAGSSDRP MSQLKRRESD GCTVRKRTPR  180
FPINHSSRRD NSGFYVSPYK RSQKREVDDV AHGAALALTE ASQRGGSPQV SQSPYRIDRM  240
KTTPLKGRQK TLDTARTKLH GNLIDEDCFE GSSGSGGAEN GAYPRDASIF MDTENVAAED  300
VHQKGRKFYS QKDDNEFDDG GEACSGTGEG LAVGSIGGKF DIEVADENIE QSSSQGKRKR  360
NKKLYFRDET SGLDALQTLA DLSLMIQSSK VDSESPVLKE DKPPTGISDN NVSGRPGSNG  420
HRRHKTKMSV DKEKLLNEFP RADASKSGKS KPGRESKVDY KALSEGKQLD QSINKSWKRK  480
NKSSSFEALF NDEEKCASKP LCANQDNVPS KNCKSTRLVE YSSSNSNTSR TGADSAVSTA  540
LLPASDGVDL PFKRRNKRKV DPNRISNHGE MKLAKINLKD QPNKKIEPQE GTLYLKDKAF  600
CCLSSCMVRR WSTYEWFYSA IDYPWFAKRE FVEYLNHVGL GHIPRLTKVE WGVIRSSLGK  660
PRRFSRNFLH EEREKLWQYR ESVRKHYTEL RSGIREGLPT DLARPLSVGQ RVIALHPESR  720
EVHDGSVLTV DHDKCRIQFD RPELGVAFVK DIDCMPLNLL DNMPEALRRE SSALYRFSMN  780
SGEPRLPQSA TGSSMLYTSR EHFEQSPTIA LMSQRPGHNG SGAPAKAEDN VISQHAPNAP  840
PCSVSQIQAK ETDIRALSEL TRALDKKEAI LAELKLVNDG LMSHENETGI AMKVSESFKK  900
EYAMVLLQLK EASDQVSSAL LNLRQRNTYP GNPLPPWQKL HSSSSGIIGP TSSADNFPSN  960
NQLAPSVVEI VNNSRLEAHK LVHTAVQAMS KIKVEQNVLS SVVAVLDSLG VGKNPIEYGS  1020
STIRHSEQPN GGTYKHKLNC TPDTSLNNHA SDSKLQRESD ETEATIPFEL IVSCVATYHM  1080
IQMCTERQYP PADVVQMLDS AFTNLHPHCP QNLPIFREIQ MCMGRVKTQI LALVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-159	MYB_related family protein