PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966327.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 362aa MW: 41743.1 Da PI: 9.8556

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	74	172	1	90
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 k+Y++YA ++GF+vr++++kk+ ++++ i +r++vCs++g++++++ + e++ r+++ +r gC+a+lk++++k ++ +e++++++ Hn XP_024966327.1 74 KMYKTYADNAGFDVRVHAKKKKktNKHDDIQTRWLVCSRQGTPRKKDFDsldmhaGERRYRNTNIKRSGCNACLKIHLKKdRACYEIYEFVEAHN 168 68***********99888874455667************999999999888888999************98999******* PP FAR1 87 Hela 90 H+l+ XP_024966327.1 169 HALF 172 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDNTSVNHID NNGNDEVKHG YDYVRNLNSG DDEDDQSVSI VESSEGIKFF TPKVDDTLKP 60 KTNAQYASIN EVEKMYKTYA DNAGFDVRVH AKKKKKTNKH DDIQTRWLVC SRQGTPRKKD 120 FDSLDMHAGE RRYRNTNIKR SGCNACLKIH LKKDRACYEI YEFVEAHNHA LFDINFRRFS 180 RKNRQMKYTD FKXVLNSSSY KVGARRAHRI QTALNGGFEH TRVSKIDFKN FKRDAVACVG 240 NKDTNMLINK LSNRRDIVPH MNRHTMIFVP FLAVDDHKAS VVVESALISG KTIDNFSWIL 300 KAFLKCHDKQ PLFVITDQCS TMKQAIQMVS AALNHDPSFN KVINKLVWNI HIGPTEFETR 360 LA

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDNTSVNHID NNGNDEVKHG YDYVRNLNSG DDEDDQSVSI VESSEGIKFF TPKVDDTLKP  60
KTNAQYASIN EVEKMYKTYA DNAGFDVRVH AKKKKKTNKH DDIQTRWLVC SRQGTPRKKD  120
FDSLDMHAGE RRYRNTNIKR SGCNACLKIH LKKDRACYEI YEFVEAHNHA LFDINFRRFS  180
RKNRQMKYTD FKXVLNSSSY KVGARRAHRI QTALNGGFEH TRVSKIDFKN FKRDAVACVG  240
NKDTNMLINK LSNRRDIVPH MNRHTMIFVP FLAVDDHKAS VVVESALISG KTIDNFSWIL  300
KAFLKCHDKQ PLFVITDQCS TMKQAIQMVS AALNHDPSFN KVINKLVWNI HIGPTEFETR  360
LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-10	FAR1 family protein