PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024966239.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 734aa    MW: 80752.8 Da    PI: 5.9525
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024966239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-193085156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+eq++ Le+ F+++++p++++r +L+++lgL+ rq+k+WFqNrR++ k
  XP_024966239.1 30 KKRYHRHTAEQIQLLEATFKECPHPDEKMRLQLSRELGLNPRQIKFWFQNRRTQLK 85
                    688999**********************************************9877 PP
2START150.11.9e-472414672206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a +a++el+k+ + +ep+W+ks+      ++ d++ ++f++ ++        +e +rasg v m +++lv  + d+  +W   ++    ka t+
  XP_024966239.1 241 IATAAMDELLKLFQTDEPLWTKSAvdgrNVLEIDTYERIFPRPNTsiknphLWIEGSRASGDVMMHSMQLVDMFADST-KWADLFPtivsKARTI 334
                     67899********************9998888999999998888899999999******************9999999.99999988898***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     evissg        lqlm+ elq+ splvp R f+f+Ryi+q + ++w++vdvS d++q+      s   +++lpSg+li+ ++ng+skv+w+eh
  XP_024966239.1 335 EVISSGvfgdqsRSLQLMYEELQVVSPLVPiRQFLFIRYIQQIEPETWAVVDVSYDPPQDDDGfPYSQLNSRRLPSGCLIHGMPNGYSKVIWIEH 429
                     *************************************************************99988888999*********************** PP

                     EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      + ++++  h l+r l+ sgla+ga +wva+lqr+ce+
  XP_024966239.1 430 LEIEEKTAvHRLYRDLIYSGLAFGAERWVACLQRSCER 467
                     *****9988***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MELAIGGGGG VGGSGGDDHH DQPSDPNRDK KRYHRHTAEQ IQLLEATFKE CPHPDEKMRL  60
QLSRELGLNP RQIKFWFQNR RTQLKAKSEM ADNCLLRVEN DKIRSENIAI KEALKNALCI  120
TCGGPPVAQD HLLEEQRLRF ENAHLKEELD RVSGIAAKFM GRPLSLFAPA AVPPSHLSAL  180
DLSMASYVGG TQHQMIPVAS GSGGPSLDLD LFTTTGMAAQ PPTIHPSHPL RPTDKSIVVD  240
IATAAMDELL KLFQTDEPLW TKSAVDGRNV LEIDTYERIF PRPNTSIKNP HLWIEGSRAS  300
GDVMMHSMQL VDMFADSTKW ADLFPTIVSK ARTIEVISSG VFGDQSRSLQ LMYEELQVVS  360
PLVPIRQFLF IRYIQQIEPE TWAVVDVSYD PPQDDDGFPY SQLNSRRLPS GCLIHGMPNG  420
YSKVIWIEHL EIEEKTAVHR LYRDLIYSGL AFGAERWVAC LQRSCERIVC QMVTNSNSSV  480
RELGGVIPSA DGKKIVMNLA QRMVNNFCTS IVPSSGHLGT SVSDFDDFEV HMALYKSSDP  540
SQANTMVLAV ATTVWMPFSP QFVFDFLRNE SNRHQWDVLT NHNPVQEVTH IANGAHPGNC  600
ISLLRTQNTS QTNILILQES CTDSSGSLVV YCPVDLPVIN IALSGEDPLY VPLLPSGFAI  660
TTDGRQSSTT SPATGDSSGQ NPTAGSLVTL MVQSVIGGPA WGKLGPESMT TINNLMGNTI  720
RQIKAGLNCS STTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein