PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966126.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 702aa MW: 80718.4 Da PI: 8.1042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.3e-21	69	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++Y++YA +GF++r +++k + ge+ +r fvCskeg + +++ + ek+rr+++ +rtgCka+lkv+ k +g++ev+++ + HnH XP_024966126.1 69 NMYKKYADVAGFDIRLASKKMN-LLGEVQTRYFVCSKEGIPPKKEFDslevssGEKRRRNTNFKRTGCKACLKVHYVKeSGRYEVYHFIESHNHM 162 58************987777.8999**********9999889999998999999************999************** PP FAR1 89 la 90 l+ XP_024966126.1 163 LC 164 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MSDQGEGIIC HETHDRYSNA VADEDGCYDA LSQEMGESPE GTKLWFPKVD ANICPKVGEF 60 FSSVDAVENM YKKYADVAGF DIRLASKKMN LLGEVQTRYF VCSKEGIPPK KEFDSLEVSS 120 GEKRRRNTNF KRTGCKACLK VHYVKESGRY EVYHFIESHN HMLCRSDEKL FTHSRRQLDY 180 KDHKNVYHAS SSKVGITQSR MMQLAINGGL VSSGGTARDH MNFRRDIMLF VGNKDAQMLI 240 NKMNKRREHC PEYFFEYKCD EKELIAIFWA DETARMNYKH FGDTISFDAT FRTNKHAIIF 300 VPLVAIDNHK KSVVVGASLI RNESIVNFTW VLKAFMKAHG SQPQFIRDHL AHGTPFKSKF 360 NKLVWNVHLS PEYFEEKWNA LMDEFGLRGH SWFEEMYAIR ESWILAYFND YPMSGLMKTT 420 SSQRKEHCSL EVATRTTIPK LLSPSKIEAQ TANVYTKTMF FEVQKEMNKA VWFCGVVDVV 480 EVGDKMIYSI THKNKNSEIK ATYKVVHDVG DDSFDCSCNH FVRNGILCRH AFKVMLNSEV 540 QYIPEKYILP RWRRELVPVE LLSARVRYGE MDVEKQALIN QATSMFDLII GRVRNDKEAL 600 TEFVERLECL GDEISVDIPV LTGTEQKIND IQELLCVSEP ESVDVLPPTG IRNKGCGTRK 660 CLVGMSERIS MNAKKPKRLC RTCDKMGWHD SRNCPSKGDS TK

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MSDQGEGIIC HETHDRYSNA VADEDGCYDA LSQEMGESPE GTKLWFPKVD ANICPKVGEF  60
FSSVDAVENM YKKYADVAGF DIRLASKKMN LLGEVQTRYF VCSKEGIPPK KEFDSLEVSS  120
GEKRRRNTNF KRTGCKACLK VHYVKESGRY EVYHFIESHN HMLCRSDEKL FTHSRRQLDY  180
KDHKNVYHAS SSKVGITQSR MMQLAINGGL VSSGGTARDH MNFRRDIMLF VGNKDAQMLI  240
NKMNKRREHC PEYFFEYKCD EKELIAIFWA DETARMNYKH FGDTISFDAT FRTNKHAIIF  300
VPLVAIDNHK KSVVVGASLI RNESIVNFTW VLKAFMKAHG SQPQFIRDHL AHGTPFKSKF  360
NKLVWNVHLS PEYFEEKWNA LMDEFGLRGH SWFEEMYAIR ESWILAYFND YPMSGLMKTT  420
SSQRKEHCSL EVATRTTIPK LLSPSKIEAQ TANVYTKTMF FEVQKEMNKA VWFCGVVDVV  480
EVGDKMIYSI THKNKNSEIK ATYKVVHDVG DDSFDCSCNH FVRNGILCRH AFKVMLNSEV  540
QYIPEKYILP RWRRELVPVE LLSARVRYGE MDVEKQALIN QATSMFDLII GRVRNDKEAL  600
TEFVERLECL GDEISVDIPV LTGTEQKIND IQELLCVSEP ESVDVLPPTG IRNKGCGTRK  660
CLVGMSERIS MNAKKPKRLC RTCDKMGWHD SRNCPSKGDS TK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-56	FAR1 family protein