PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966085.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 769aa MW: 88536.2 Da PI: 8.9061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.9e-19	69	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++Y+ +GF++r+ ++k ++ g + +r f Cskeg++++++ + +++rr+++ +rtgCka+lkv+ k +g++ev+++ + HnH XP_024966085.1 69 KMYRKYGDVAGFDIRMGTKKLNSLGG-VQTRYFICSKEGNPTKKEFDslevssGDRKRRNTNFKRTGCKACLKVHYVKeSGRYEVYHFIEGHNHM 162 68*************999986666.99**********9999999999899999*************999************** PP FAR1 89 la 90 l+ XP_024966085.1 163 LC 164 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MSDQREGISS NEIHYEYSDA VANEDGCDDA LSQEMGESPG GTKIWVPKVD SKICPKVGDV 60 FSSVESVEKM YRKYGDVAGF DIRMGTKKLN SLGGVQTRYF ICSKEGNPTK KEFDSLEVSS 120 GDRKRRNTNF KRTGCKACLK VHYVKESGRY EVYHFIEGHN HMLCCSDEKM FTRSRRQLDY 180 KDRRNVYHAS SSKVGITQSR RMQLAMNGGL VASGGTARDH MNFRRDIMLF VGNKDAQMLI 240 NKMSKRREHC PEYFFEYKCD EKELIAIFWA DKTARMNYKH FGDTISFDAT FRTNKHAMIF 300 VPFVAIDNHK KSVVVGASLI RNESVVNFTW VLNVFMKAHG SQPQFVITDQ CAAMKQAIPI 360 VFPKSIHRLC MWHITKKVKE KIRDHLAHGT PFKSKFNKLV WNVHISRESF EDKWNALMDE 420 YGLRGHSWFE EMYAIRDSWI PAYFKEYPMS GLMRTTSRSE SINSFFNVYT KYWNDLVYFL 480 NTFDDAIESQ RKEHCSLEVA TRTTIPKLLS PSKIEAQAAK VYTKTIFFDV QKEMNKAVWF 540 CGVVEVVEVG DKMIYSNTHK NKNSEVKATY KVVHDVRDES FECSCNHFVR NGILCRHAFK 600 VMLNSEVQSI PEKYILPRWR RELVPIELMS ARVRYGEMDV EKQALINQAI SMFDVIIGRV 660 RNDKGALTEF VNQLEHLGDE ISADVPILTV TEQKRNDIEE LLCVTEPESV DVLPPTGVRN 720 KGCGTGKRLV GVSERVSMNA KKPKRLCRTC DKMGWHDSRN CPMKGDSTX

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MSDQREGISS NEIHYEYSDA VANEDGCDDA LSQEMGESPG GTKIWVPKVD SKICPKVGDV  60
FSSVESVEKM YRKYGDVAGF DIRMGTKKLN SLGGVQTRYF ICSKEGNPTK KEFDSLEVSS  120
GDRKRRNTNF KRTGCKACLK VHYVKESGRY EVYHFIEGHN HMLCCSDEKM FTRSRRQLDY  180
KDRRNVYHAS SSKVGITQSR RMQLAMNGGL VASGGTARDH MNFRRDIMLF VGNKDAQMLI  240
NKMSKRREHC PEYFFEYKCD EKELIAIFWA DKTARMNYKH FGDTISFDAT FRTNKHAMIF  300
VPFVAIDNHK KSVVVGASLI RNESVVNFTW VLNVFMKAHG SQPQFVITDQ CAAMKQAIPI  360
VFPKSIHRLC MWHITKKVKE KIRDHLAHGT PFKSKFNKLV WNVHISRESF EDKWNALMDE  420
YGLRGHSWFE EMYAIRDSWI PAYFKEYPMS GLMRTTSRSE SINSFFNVYT KYWNDLVYFL  480
NTFDDAIESQ RKEHCSLEVA TRTTIPKLLS PSKIEAQAAK VYTKTIFFDV QKEMNKAVWF  540
CGVVEVVEVG DKMIYSNTHK NKNSEVKATY KVVHDVRDES FECSCNHFVR NGILCRHAFK  600
VMLNSEVQSI PEKYILPRWR RELVPIELMS ARVRYGEMDV EKQALINQAI SMFDVIIGRV  660
RNDKGALTEF VNQLEHLGDE ISADVPILTV TEQKRNDIEE LLCVTEPESV DVLPPTGVRN  720
KGCGTGKRLV GVSERVSMNA KKPKRLCRTC DKMGWHDSRN CPMKGDSTX

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-88	FAR1 family protein