PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966060.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 502aa MW: 56051.1 Da PI: 6.1393

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.5e-13	312	357	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av+YI++L XP_024966060.1 312 NHVEAERQRREKLNQRFYALRSVVPTV-----SRMDKASLLADAVDYINEL 357 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MDDLIVSPSS SSSMVSFPNT TIPHPSATIH QKLQNLLQNQ SQPWAYAIFW QTFNDSSNGC 60 VSLSWGDGHF QTNSDVPPTT VLSDSDPDAD CRKSLLSEFQ ALLGPENRHD PEWFYVMSLT 120 TSFTLGDGSV PGSALGSNTL IWLSGVDQLR SLNCERAKEA RIHGLETLVC IPTPNGVVEM 180 GSHHVIEESW ILPHQVQSLF GRGSSNLNNV EHQKNVISFA DMLFMAGGLQ EEDEGLNVID 240 FESTTSDHQN IGKLSKNNDT AAMITNTHAE TTSEHSDSDC QLVLATRERR IHEKKKGKKT 300 IKPGGRDAPP VNHVEAERQR REKLNQRFYA LRSVVPTVSR MDKASLLADA VDYINELKGK 360 VEYLESQLHP PINHHRKTRK VKMEVADTVD NPVQSSSSRS LMYQTQPTIQ INKKTTKSNT 420 SGGFWEVEVK MVGEDAMIRV QSENRDLPVA KLMDALREMK AEIRHASMSL MNKIMLQDVV 480 VRIPGAIDED ELKTDLLRRL DS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MDDLIVSPSS SSSMVSFPNT TIPHPSATIH QKLQNLLQNQ SQPWAYAIFW QTFNDSSNGC  60
VSLSWGDGHF QTNSDVPPTT VLSDSDPDAD CRKSLLSEFQ ALLGPENRHD PEWFYVMSLT  120
TSFTLGDGSV PGSALGSNTL IWLSGVDQLR SLNCERAKEA RIHGLETLVC IPTPNGVVEM  180
GSHHVIEESW ILPHQVQSLF GRGSSNLNNV EHQKNVISFA DMLFMAGGLQ EEDEGLNVID  240
FESTTSDHQN IGKLSKNNDT AAMITNTHAE TTSEHSDSDC QLVLATRERR IHEKKKGKKT  300
IKPGGRDAPP VNHVEAERQR REKLNQRFYA LRSVVPTVSR MDKASLLADA VDYINELKGK  360
VEYLESQLHP PINHHRKTRK VKMEVADTVD NPVQSSSSRS LMYQTQPTIQ INKKTTKSNT  420
SGGFWEVEVK MVGEDAMIRV QSENRDLPVA KLMDALREMK AEIRHASMSL MNKIMLQDVV  480
VRIPGAIDED ELKTDLLRRL DS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	417	RKTRKVKMEVADTVDNPVQSSSSRSLMYQTQPTIQINKKTTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-67	bHLH family protein