PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024966041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26830.7 Da PI: 8.9171 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n s rqvtfskR++g+lKKA+EL +LCdaeva++ifsstgkl+ey+s XP_024966041.1 9 KRIDNISSRQVTFSKRKTGLLKKAKELAILCDAEVALLIFSSTGKLHEYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 79.2 | 1e-26 | 84 | 171 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++k + +qqe+a+L++++ Lq+++R+llGe+L sL+ ++Lq+Le+qLe lkk+R K+++l+++i+el +k +++enk+L++k+ XP_024966041.1 84 TSKVKFWQQEAARLRQQLLYLQQSHRQLLGEELASLNAEDLQKLETQLEITLKKVRMNKEQVLTDEIKELNQKRSLIDQENKKLHEKI 171 57899*********************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGRGKIEIKR IDNISSRQVT FSKRKTGLLK KAKELAILCD AEVALLIFSS TGKLHEYASS 60 SMDTVVERYD KVINEGHDQL LDPTSKVKFW QQEAARLRQQ LLYLQQSHRQ LLGEELASLN 120 AEDLQKLETQ LEITLKKVRM NKEQVLTDEI KELNQKRSLI DQENKKLHEK ITLLHQETAE 180 LQKKIYALRS MDESNKNSSP YSFSIDEAPI SLQLSQPQPQ ENDISAQAMK LRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 4e-65 | MIKC_MADS family protein |