PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966026.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 312aa MW: 34182.3 Da PI: 8.2786

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.2	1.6e-09	161	187	1	26
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 yk+ lC ++++ +C+yG +C+FaHg XP_024966026.1 161 YKMDLCLSYLENSgFCRYGLKCQFAHG 187 899******988**********8 PP
2	zf-CCCH	29.8	1.1e-09	204	226	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++ +G C++G++C+F H XP_024966026.1 204 TPCKNYNVSGSCSFGSKCHFLHH 226 59********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MDTLYGISNS KVPKRSSLSS INNFGPQNPF YHHTGPMLDP YASPEGHTTV LKDLNSPFLR 60 YLQSARSLFT APVSAGDHLP SAGYKYHRSS HRSAESSSRF EPPRQSRAPL LFSNTPVKVE 120 EDVLVMDGVL VKNPPVDRGR SLSSLSLTDS GVSSSSSGKD YKMDLCLSYL ENSGFCRYGL 180 KCQFAHGNKE LRPSPFSFRT TLETPCKNYN VSGSCSFGSK CHFLHHETSA APSQTVATST 240 TRTISPIKLD EPATSTVNLK STEWSPLDDD IEIPAPTNNT PSKEDVEALI TKAVYGPSRI 300 KRLPVFGQIC PE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	7e-09	C3H family protein