PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966005.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 684aa MW: 78868.4 Da PI: 8.4421

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62	1.7e-19	133	228	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF++r s++k + + g+it+r +vCskeg+++++ + + ++ r+++ +r gC a+lk++ k +++ev+k++++HnH XP_024966005.1 133 KMYRKYANEAGFDIRLSNKKIN-KLGRITSRFYVCSKEGRPQSKYFDsldvlpSGRTFRNSNIKRSGCGACLKIHFVKePNQYEVYKFVEQHNHI 226 68************998887.7777************9999999999999*************99989************9 PP FAR1 89 la 90 l+ XP_024966005.1 227 LF 228 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MDPISFNETF VKDIFDEIGG INGKRKGFDL DREIATATND GTTQDKCNYS ARDEDGCIRQ 60 NETIPERSDS ITGRVSAEFD DDDVASLSNE SEDYRYQDMG ETSDGSKYWF PSVDVKYKPK 120 VGDSFESVES AEKMYRKYAN EAGFDIRLSN KKINKLGRIT SRFYVCSKEG RPQSKYFDSL 180 DVLPSGRTFR NSNIKRSGCG ACLKIHFVKE PNQYEVYKFV EQHNHILFNK EEMRFSRFKR 240 KLHYADHKNV FHGSSSKVGV TKSHRFMNAV KGGVDSSGGT VRDHQNFKRD MAYFVGNTDA 300 QMLLNVMANR RKELLAIFWA DETARSHYRE FGDAISFDAT FRTNKHVMIF VLFVAIDNHK 360 KSVVVRAALI HNESVVDYTW VLKAFVKAHG RQPCFVITDQ CALMKQAIPI AFPESRHRLC 420 MWHITKKVKS KFVSEFNKLV WNVHLGPNEF EMQWNNLIEF YGLRGDPWLD ELYDIRESWI 480 PAYYKDYHMS GLMKTASRSE SINAFFNVYA HFWHDLVVFL RSFDNAIESQ RATHGSLEVT 540 IKSTIPRLVS PCKLEAHAAE AYTRTIFFEV QKELRKAVWL CRIRNEKDIL SRFVDQLEQW 600 DSKVDSELHL QSHTEETTTS IKEFLGVSQP ETVDVLPPTG IRNKGCGTGK RLINAAEKAI 660 SNGKSRRESV AYVVKWLHMI PEIV

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MDPISFNETF VKDIFDEIGG INGKRKGFDL DREIATATND GTTQDKCNYS ARDEDGCIRQ  60
NETIPERSDS ITGRVSAEFD DDDVASLSNE SEDYRYQDMG ETSDGSKYWF PSVDVKYKPK  120
VGDSFESVES AEKMYRKYAN EAGFDIRLSN KKINKLGRIT SRFYVCSKEG RPQSKYFDSL  180
DVLPSGRTFR NSNIKRSGCG ACLKIHFVKE PNQYEVYKFV EQHNHILFNK EEMRFSRFKR  240
KLHYADHKNV FHGSSSKVGV TKSHRFMNAV KGGVDSSGGT VRDHQNFKRD MAYFVGNTDA  300
QMLLNVMANR RKELLAIFWA DETARSHYRE FGDAISFDAT FRTNKHVMIF VLFVAIDNHK  360
KSVVVRAALI HNESVVDYTW VLKAFVKAHG RQPCFVITDQ CALMKQAIPI AFPESRHRLC  420
MWHITKKVKS KFVSEFNKLV WNVHLGPNEF EMQWNNLIEF YGLRGDPWLD ELYDIRESWI  480
PAYYKDYHMS GLMKTASRSE SINAFFNVYA HFWHDLVVFL RSFDNAIESQ RATHGSLEVT  540
IKSTIPRLVS PCKLEAHAAE AYTRTIFFEV QKELRKAVWL CRIRNEKDIL SRFVDQLEQW  600
DSKVDSELHL QSHTEETTTS IKEFLGVSQP ETVDVLPPTG IRNKGCGTGK RLINAAEKAI  660
SNGKSRRESV AYVVKWLHMI PEIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-56	FAR1 family protein