PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965867.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 721aa MW: 83565.4 Da PI: 8.1353

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.6e-10	123	164	50	90
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ r+++ +r+gC+a+lk++++k g +e++++++eHnH l+ XP_024965867.1 123 RRYRNTNLKRCGCNACLKIHLTKdGGCYEIYEFVEEHNHXLF 164 5678999*************9899***********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MKKTCCVIKE DDDAGKTEES RIRRAPERAG TMEESTGERG TTTMLFSRLT TSLQAGFDDL 60 TPPHTDFEYD IGETSEGSKY FIPNVDDALK PKTNAQYATL NDAEKMYRDY ADKAGFDVRP 120 GERRYRNTNL KRCGCNACLK IHLTKDGGCY EIYEFVEEHN HXLFNXNDXR FSRKNRQMKY 180 TDFKTVLNSS SYKVGVRRAH RIQTTLNGGF EHTRVSEIDF KNFKRDAVAC VGNKDATMLI 240 NKLSNRRDVV PGYFFEYMYN EHELIAIFWA DEVSRIKYKE FGDVISFDGT FRTNKHAMIF 300 VPFLAVDNHK ASVVVGSALI SGETIENFIW VSKAFIKCHE KQPVFVITDQ CSAMKQAIPM 360 VLTEAKHRLC MWHIMKKVPS KVNVALNQDP NFNKVINKLV WNIHIGPAKF ERRWHEMIEQ 420 YNLGGDTWFT DMYAIRHSWI PAFYKDTPMS GLMKTTSRSE SSNSYINIYE SYWFDLVQFL 480 NNYDVAIEKQ RYRQSVHETV TRTTNPKFVT PLRLESYASR IYSRNVFFDI QKEIKKAVWC 540 CAIENVECRD VLKTFVISHK TKKSSENITY LVNRNYSTNT VECECNLFTR NGYLCRHAFK 600 IQSARVRYGE VDAEKEKCII DVYSKVDEII SIARNDKSIL ARLERNLDTF MLDIAKEVPY 660 ENPSQQRMDA IREHLGVSIP DEVDILPPSG IRNKGCGTGK RLMPYDLEME IPREGDFCVM 720 A

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MKKTCCVIKE DDDAGKTEES RIRRAPERAG TMEESTGERG TTTMLFSRLT TSLQAGFDDL  60
TPPHTDFEYD IGETSEGSKY FIPNVDDALK PKTNAQYATL NDAEKMYRDY ADKAGFDVRP  120
GERRYRNTNL KRCGCNACLK IHLTKDGGCY EIYEFVEEHN HXLFNXNDXR FSRKNRQMKY  180
TDFKTVLNSS SYKVGVRRAH RIQTTLNGGF EHTRVSEIDF KNFKRDAVAC VGNKDATMLI  240
NKLSNRRDVV PGYFFEYMYN EHELIAIFWA DEVSRIKYKE FGDVISFDGT FRTNKHAMIF  300
VPFLAVDNHK ASVVVGSALI SGETIENFIW VSKAFIKCHE KQPVFVITDQ CSAMKQAIPM  360
VLTEAKHRLC MWHIMKKVPS KVNVALNQDP NFNKVINKLV WNIHIGPAKF ERRWHEMIEQ  420
YNLGGDTWFT DMYAIRHSWI PAFYKDTPMS GLMKTTSRSE SSNSYINIYE SYWFDLVQFL  480
NNYDVAIEKQ RYRQSVHETV TRTTNPKFVT PLRLESYASR IYSRNVFFDI QKEIKKAVWC  540
CAIENVECRD VLKTFVISHK TKKSSENITY LVNRNYSTNT VECECNLFTR NGYLCRHAFK  600
IQSARVRYGE VDAEKEKCII DVYSKVDEII SIARNDKSIL ARLERNLDTF MLDIAKEVPY  660
ENPSQQRMDA IREHLGVSIP DEVDILPPSG IRNKGCGTGK RLMPYDLEME IPREGDFCVM  720
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-56	FAR1 family protein