PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965787.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 446aa MW: 51621.6 Da PI: 10.1326

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34	9.5e-11	65	113	43	90
FAR1 43 eekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 e ++++++rr+++ +r gCka+lkv+ k +g++ev+k+++ HnH l+ XP_024965787.1 65 LEASSSDRRRRNTNFKRNGCKACLKVHYVKkSGHYEVYKFVETHNHMLC 113 44455789999**************9999**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MGDMSGGISS NEMINKSNNV ISNGDECDVN MNYRKKWENH RGSELWVPKV LFKEGIPLKK 60 EFDSLEASSS DRRRRNTNFK RNGCKACLKV HYVKKSGHYE VYKFVETHNH MLCRPDEMMF 120 SRSRRQLDYK DRKNVYHTSS SKVGITQSRR MQLAIKGGLE SIGGTARDHI NFKRDIVLFY 180 DEKELIAIFW ADETARSNYK HFGDTISFDA TFWSNKHAMI FVPFVAIDNH KKSVVVGASL 240 IRSEYVINLS WVLKAFMKAH GRQPQKMNAM MDEYGLRGHS WFEEMYTIRE SWIPAYSKDY 300 PMSGLMKTTS RYARWFMILG KSLLIVVATI LFAMAYYIAM RLRYGEMDVE KQVMINQVVS 360 MFDLIIGRVR KDKNSLAKFV DQLEQWVDIL PPTGIRNKGC GTGKRLVGIS ERTSVNAKKP 420 KRLCITCEKM AWHDSRNCPS KSDGTK

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MGDMSGGISS NEMINKSNNV ISNGDECDVN MNYRKKWENH RGSELWVPKV LFKEGIPLKK  60
EFDSLEASSS DRRRRNTNFK RNGCKACLKV HYVKKSGHYE VYKFVETHNH MLCRPDEMMF  120
SRSRRQLDYK DRKNVYHTSS SKVGITQSRR MQLAIKGGLE SIGGTARDHI NFKRDIVLFY  180
DEKELIAIFW ADETARSNYK HFGDTISFDA TFWSNKHAMI FVPFVAIDNH KKSVVVGASL  240
IRSEYVINLS WVLKAFMKAH GRQPQKMNAM MDEYGLRGHS WFEEMYTIRE SWIPAYSKDY  300
PMSGLMKTTS RYARWFMILG KSLLIVVATI LFAMAYYIAM RLRYGEMDVE KQVMINQVVS  360
MFDLIIGRVR KDKNSLAKFV DQLEQWVDIL PPTGIRNKGC GTGKRLVGIS ERTSVNAKKP  420
KRLCITCEKM AWHDSRNCPS KSDGTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-23	FAR1 family protein