PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965781.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 676aa MW: 78574.8 Da PI: 9.2423

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.6e-21	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA ++GF+vr +++k++ +ng i +r+fvC++eg+++++ + e++ r+++ +r+gC+ ++k++++k ++ +e++++++ HnH+l+ XP_024965781.1 1 MYRAYADNAGFDVRLHAKKTN-KNGDIQTRWFVCNREGTTNKKFFDsmdiqfGERRYRNTNLKRCGCNTCIKIHLKKdKSGYEIYEFVEAHNHALF 95 6***********9987777.7888**********999888899999899999**************98999***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MYRAYADNAG FDVRLHAKKT NKNGDIQTRW FVCNREGTTN KKFFDSMDIQ FGERRYRNTN 60 LKRCGCNTCI KIHLKKDKSG YEIYEFVEAH NHALFNTNDR RFSRKNRQMK YTDFKNVLNS 120 SSYKVGAIRA HRIQTTLNGR FEHNRYSEID FKNFKRDAVA CVGKKDAKML INKLSNRRDI 180 VPGYFFEYKC NDQELGAIFL ADDVARVNYK EFGDVISFDG TFHTNKHAMI FVPFLAVDNH 240 KASVIVGSAL ISGETIENFT WVLRAFLKCH EKQPVFVITD QSSAMKQAVP LVSVALNQDP 300 LFNKVINKLV WNINIGPSEF ETKWQEMTEQ YNLGGDLWFT EMYEIRASWI PAYYKDTPMS 360 GLMKMTSRFE SSNSCINIYE SYWFDLVQFL NNYDVAIEKQ RYKQAVHETI TRTTYLKLFI 420 PLHLESQASR VYSRNVFFDI QKEIKKAVWF CRIKTVECRG DLKMFIISHK NKKSFVNTTY 480 LVSRNYPTNT VECECNLFTR NGYLCRHAFK VLINDEVESI PNQYVLCRWK QNLVPVQIQS 540 ARVRYGEVDA EKGKSIIDVY SKVDDIISIA RNDKSILTRL EQTLDNFMVD IEKEVPYEDL 600 SQQKLDAIRD HLGVSIPDDV DILPPSGIRN KGCGTGKRLV SMSEKIQSVS KKTRRKCATC 660 GQRTGHDSRN CPELIE

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MYRAYADNAG FDVRLHAKKT NKNGDIQTRW FVCNREGTTN KKFFDSMDIQ FGERRYRNTN  60
LKRCGCNTCI KIHLKKDKSG YEIYEFVEAH NHALFNTNDR RFSRKNRQMK YTDFKNVLNS  120
SSYKVGAIRA HRIQTTLNGR FEHNRYSEID FKNFKRDAVA CVGKKDAKML INKLSNRRDI  180
VPGYFFEYKC NDQELGAIFL ADDVARVNYK EFGDVISFDG TFHTNKHAMI FVPFLAVDNH  240
KASVIVGSAL ISGETIENFT WVLRAFLKCH EKQPVFVITD QSSAMKQAVP LVSVALNQDP  300
LFNKVINKLV WNINIGPSEF ETKWQEMTEQ YNLGGDLWFT EMYEIRASWI PAYYKDTPMS  360
GLMKMTSRFE SSNSCINIYE SYWFDLVQFL NNYDVAIEKQ RYKQAVHETI TRTTYLKLFI  420
PLHLESQASR VYSRNVFFDI QKEIKKAVWF CRIKTVECRG DLKMFIISHK NKKSFVNTTY  480
LVSRNYPTNT VECECNLFTR NGYLCRHAFK VLINDEVESI PNQYVLCRWK QNLVPVQIQS  540
ARVRYGEVDA EKGKSIIDVY SKVDDIISIA RNDKSILTRL EQTLDNFMVD IEKEVPYEDL  600
SQQKLDAIRD HLGVSIPDDV DILPPSGIRN KGCGTGKRLV SMSEKIQSVS KKTRRKCATC  660
GQRTGHDSRN CPELIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-52	FAR1 family protein